Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1778 |
Symbol | |
ID | 4483658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 2198516 |
End bp | 2199184 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639722520 |
Product | HAD family hydrolase |
Protein accession | YP_865692 |
Protein GI | 117925075 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0979226 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000822361 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGACAAGCG AGTATGCGTT GGTGATTTTT GATTGTGACG GCACTCTGGT CGATAGCCAG GGGGGAATAG CCAGGGTGTT GAATTTAGCC CTTGAGGAGG CCGGTTTACC CACGGTGAGC CACGCTCAAG CGGGGGCCAT TGTAGGGCTC TCGCTGGATC AAGCGGCGCT GGCGCTGTTG CCAGAGGCCA GTGCTGAACA ACGGCAACAG GTGGTGGATG CCTACCGGCG TATCTACCGC ACCATGGCCG ATGATAAGTT ACTCCAGCAC CCGCTGTTTC CCGGTGTGCG TGAGACCTTG GAGCAACTAA AGAGCGCAGG GGTAACCCTT GCGGTGGCCA CCGGTAAATC CATGGCGGGC ATGCAGCGCA CCATTGCGGA ACATCACTTA GAGGGGCTTT TTACGCTGGT TAAAACCGCC GATTGTGCCC CCTCTAAACC CCATCCGGGT ATGGTGCAGC AGATCTTGGA TGCAACCCTG ATACCCGCGG CGTTAACCCT GATGGTGGGG GATACCACCT TTGATATGGA TATGGGGCGC GCCGCTGGGG TAGATACCTG TGCATTCCCA TCGGGTTGTC ATCCACAGGA GCTGCTTGAG CGCTGTCGTC CGACCCATTG GATTGCAGAA ATTCCCCAGG TGCTAAGCTT AAAACCGGTG CGAGGATAA
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Protein sequence | MTSEYALVIF DCDGTLVDSQ GGIARVLNLA LEEAGLPTVS HAQAGAIVGL SLDQAALALL PEASAEQRQQ VVDAYRRIYR TMADDKLLQH PLFPGVRETL EQLKSAGVTL AVATGKSMAG MQRTIAEHHL EGLFTLVKTA DCAPSKPHPG MVQQILDATL IPAALTLMVG DTTFDMDMGR AAGVDTCAFP SGCHPQELLE RCRPTHWIAE IPQVLSLKPV RG
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