Gene Mmc1_1778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1778 
Symbol 
ID4483658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2198516 
End bp2199184 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content57% 
IMG OID639722520 
ProductHAD family hydrolase 
Protein accessionYP_865692 
Protein GI117925075 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0979226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000822361 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGACAAGCG AGTATGCGTT GGTGATTTTT GATTGTGACG GCACTCTGGT CGATAGCCAG 
GGGGGAATAG CCAGGGTGTT GAATTTAGCC CTTGAGGAGG CCGGTTTACC CACGGTGAGC
CACGCTCAAG CGGGGGCCAT TGTAGGGCTC TCGCTGGATC AAGCGGCGCT GGCGCTGTTG
CCAGAGGCCA GTGCTGAACA ACGGCAACAG GTGGTGGATG CCTACCGGCG TATCTACCGC
ACCATGGCCG ATGATAAGTT ACTCCAGCAC CCGCTGTTTC CCGGTGTGCG TGAGACCTTG
GAGCAACTAA AGAGCGCAGG GGTAACCCTT GCGGTGGCCA CCGGTAAATC CATGGCGGGC
ATGCAGCGCA CCATTGCGGA ACATCACTTA GAGGGGCTTT TTACGCTGGT TAAAACCGCC
GATTGTGCCC CCTCTAAACC CCATCCGGGT ATGGTGCAGC AGATCTTGGA TGCAACCCTG
ATACCCGCGG CGTTAACCCT GATGGTGGGG GATACCACCT TTGATATGGA TATGGGGCGC
GCCGCTGGGG TAGATACCTG TGCATTCCCA TCGGGTTGTC ATCCACAGGA GCTGCTTGAG
CGCTGTCGTC CGACCCATTG GATTGCAGAA ATTCCCCAGG TGCTAAGCTT AAAACCGGTG
CGAGGATAA
 
Protein sequence
MTSEYALVIF DCDGTLVDSQ GGIARVLNLA LEEAGLPTVS HAQAGAIVGL SLDQAALALL 
PEASAEQRQQ VVDAYRRIYR TMADDKLLQH PLFPGVRETL EQLKSAGVTL AVATGKSMAG
MQRTIAEHHL EGLFTLVKTA DCAPSKPHPG MVQQILDATL IPAALTLMVG DTTFDMDMGR
AAGVDTCAFP SGCHPQELLE RCRPTHWIAE IPQVLSLKPV RG