| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1777 |
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| Symbol | |
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| ID | 4482603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2197533 |
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| End bp | 2198519 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639722519 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_865691 |
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| Protein GI | 117925074 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00553261 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000101871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCCGGAAA ATTCGAAACC AACAGCTGTC CGCACTGTGC AAGTGGACGA AGAGTATGCT
GGATCGCGAC TGGACAAGTT TTTAAAAAGC CAGTTTCCCA GCGTACCATT TTCCCTGATC
CAGCGTTTAA TGCGCACCGG TCAGGTACGG GTTAACAAGG GGCGCGCCCG GGGGGATCGG
CGTTTGGCCT TTGGGGATTG GGTGCGACTG CCACCAGTAA CCCCTCCCAC CGCCGAGGAG
TTGGAACACC CCAATAAGGA GAAAATTCTC CATCAATCAG CCGATGTGGA AGCCAGAACT
CTGCATCGGG ATGGCTGGAT TTTAGTGCTC AACAAACCTG CCGGTATACC GGTACATGGG
GGTAGTGGTC ACCAGTGGGG GGTGGTCGAT GCGGTGCGGG CCAGCTTAGA AAAACTGGGC
ATTGAGGCCC AGGCTGAACT GTGCCACCGC TTGGATAAAG AGACCTCCGG GCTGTTGCTG
TTTGGTCTGC GCCCTCGGGC TGTGCGGTTA TTGACCGAAG CGATGCGGGA AAATCAGGTA
ACAAAAACCT ACTTAACCCT GGTACAAGGG GTGCCCGCAG CGCGGCAAGG GGTGATTAAC
CAGCCTTTGA GTAAGGGCAA TGTGCGCGGC GGTGAACGTA TGGTGGTGGT GGAGCAGGGG
GGGCAACGGG CGGTTACCCA CTATCGGGTA TTACGCAGCT ATGGTGTCGC TTCGCTGCTG
GAAGTACAGC TGGAAACAGG GCGTACCCAC CAGATACGGG TGCATATGCA GTGGTTGGGG
CACCCCGTTG CCGGAGATGG CAAATATGGG GATAAGGCGT TTAACAAATG GATGCGGGAG
CGTGGCCTTA AACGACTCTT TTTACATGCC TCTGAGCTAG CGTTTCGGCA TCCGGAAAAT
GAACAGAAAC TCGCTTATCA AGCCCCTTTG GATGATGAAT TGACGCGGGT CTTGGAAGGC
TTAAAGCGGC AAGAGGTGCG ATCGTGA
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| Protein sequence | MPENSKPTAV RTVQVDEEYA GSRLDKFLKS QFPSVPFSLI QRLMRTGQVR VNKGRARGDR
RLAFGDWVRL PPVTPPTAEE LEHPNKEKIL HQSADVEART LHRDGWILVL NKPAGIPVHG
GSGHQWGVVD AVRASLEKLG IEAQAELCHR LDKETSGLLL FGLRPRAVRL LTEAMRENQV
TKTYLTLVQG VPAARQGVIN QPLSKGNVRG GERMVVVEQG GQRAVTHYRV LRSYGVASLL
EVQLETGRTH QIRVHMQWLG HPVAGDGKYG DKAFNKWMRE RGLKRLFLHA SELAFRHPEN
EQKLAYQAPL DDELTRVLEG LKRQEVRS
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