| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1758 |
|---|
| Symbol | |
|---|
| ID | 4482074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2173076 |
|---|
| End bp | 2174854 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639722500 |
|---|
| Product | exonuclease RecJ |
|---|
| Protein accession | YP_865672 |
|---|
| Protein GI | 117925055 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.150743 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.165864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGCGG CGGCAAAAAG CTCGCTGACG GGTAAACTGT GGACGCTGCG CTGCCAGCCC
GATGAGGGGC ACAATCGGGT GGTGCAGGCT TTAGGGCTCT CCCACTATTT GGCCCCCTTG
CTGGCCAGCC GTAAGCTGTG CGGGGCCGGG GAGACCCGTC AATTTTTGGC CCCGCGTTTA
AAGGATTTGG CCGATCCTTA TGATCTGCTG GATATGCGCG TTGCGGTAGA GCGTTTGGCT
GAGGCGCTGG AGAGGGGTGA AAAGATCGCG GTTTTTGGGG ATTATGATGT GGATGGTGCC
ACTTCATCGG CCCTATTGAT GCGCTATTTT CATGAGCTAG GGGTGGCGCT GCGGGTCTAT
ATTCCCAACC GTTTGACCGA GGGGTATGGC CCCAGTGTTG GGGCCATGCG GACCCTAGCC
GAGGAGGGTG TCTCGCTGGT TATTACGGTG GATTGTGGGA TTACCGCTTT TGAGCCGTTG
CAGGAGGCCA AAGCGTTAGG TTTGGCGGTG ATCATTACGG ACCACCATCA AGCCCGTGAG
CAGTTGCCTG AGGCGTTGGC GGTGATCAAC CCCAACCGGC AGGATGAGCC CTTTCCCTAT
AAAGAGCTGG CCGGGGTGGG GGTGGCGTTT TATTTGGTCA TGGCGTTAAA CCGGTTATTG
CGGGAGCGGG GTTGGTTTAA CAAAGGCCGT CAAGAGCCGG TATTAAAACC GCTGTTGGAT
CTCGTAGCGG TGGGCACGGT GGCGGATGTG GCGGGCATGC GCGGTTTAAA CCGGGCGTTG
GTTACCACAG GCTTGCATGT GCTTTCGGAG CGCAGCAATC CCGGTTTGGC GGCACTCATG
CAGGTGGTGG GCATTGGTGA AGAGGTTAAA GAGCTTACCA GTACCCATAT TGGTTTTCAA
TTAGGGCCAC GGCTTAATGC GGGGGGGCGT TTGGGGCAGG GGGCGTTGGG GTATCAACTG
CTCTCCTGTC ATGATCAGGC CCAGGCATTG CCCATTGCCC AAACCCTGGA TGCCTCGAAT
AAAGAGCGGC AGGAGATTGA GCGCACCCTG CTTAAACAGG CGATGGATCA AGTGGAGGCG
GAGAATCAGC CCATTTTGCG GCGGGGCTTG GTGGTGGCGG GTGAGGGGTG GCATGCGGGG
GTGATTGGCA TTGTGGCCTC GCGCCTGTGT GACAAATACA GCAAACCCGC CTTGGTGATT
GCCATTGATG CCGAAACCGG CGTGGGTAAA GGGTCGGGGC GTTCGATCCC GGGTATAAAT
CTATTGGCGG CCATCGAGGC GGGGGCGGCT CATCTGGAAC ATTTTGGTGG GCATAAGGTG
GCGGCTGGGT TGACCATTCA ACGGGAGAAA ATCCCAGCCT TTATGGAGGC TTTTGAGGAT
CATCTTACCC GCCACTATCA GGCCTCGGCC TTTTTCCCCC GTTTAACGGT GGATGCGGAG
CTGCCGCTGG ATGAGTTGGA TTTTGCGGTG GCTCGGCAGA TTCAATCGTT TAGCCCGTTT
GGGCCGGGTA ATCCAGAGCC GATTTTTATT CTGCCCAGGG TTTCGTTGCG GGGGATTAAG
GTGCTCAAGG AGCGCCATCT GGCCATGAGC ATTGTCTGCC CACGCACCCA CCAACAGATT
GAGGCCATCG GCTTTCGCAT GGCCCCTGGT CCCATTGTGG ATGCCATTCA AGCGGGGGAT
GTGGCTGTAT GGGATGTGGC AGGCAAGCTC ACCATTGAAA CCTGGCGAGG GCGGGAGAAG
ATGAAACTGC AACTCTCCGA CGTGCGGGCT GCGGGGTGA
|
|---|
| Protein sequence | MGAAAKSSLT GKLWTLRCQP DEGHNRVVQA LGLSHYLAPL LASRKLCGAG ETRQFLAPRL
KDLADPYDLL DMRVAVERLA EALERGEKIA VFGDYDVDGA TSSALLMRYF HELGVALRVY
IPNRLTEGYG PSVGAMRTLA EEGVSLVITV DCGITAFEPL QEAKALGLAV IITDHHQARE
QLPEALAVIN PNRQDEPFPY KELAGVGVAF YLVMALNRLL RERGWFNKGR QEPVLKPLLD
LVAVGTVADV AGMRGLNRAL VTTGLHVLSE RSNPGLAALM QVVGIGEEVK ELTSTHIGFQ
LGPRLNAGGR LGQGALGYQL LSCHDQAQAL PIAQTLDASN KERQEIERTL LKQAMDQVEA
ENQPILRRGL VVAGEGWHAG VIGIVASRLC DKYSKPALVI AIDAETGVGK GSGRSIPGIN
LLAAIEAGAA HLEHFGGHKV AAGLTIQREK IPAFMEAFED HLTRHYQASA FFPRLTVDAE
LPLDELDFAV ARQIQSFSPF GPGNPEPIFI LPRVSLRGIK VLKERHLAMS IVCPRTHQQI
EAIGFRMAPG PIVDAIQAGD VAVWDVAGKL TIETWRGREK MKLQLSDVRA AG
|
|---|
| |