Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1728 |
Symbol | |
ID | 4482114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 2133115 |
End bp | 2135067 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639722470 |
Product | citrate transporter |
Protein accession | YP_865642 |
Protein GI | 117925025 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000373143 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.108041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTCC TAAATATTCC GGTTAAACAG ATTGTAGCGG CAACGATCTT TGCGATAATC GCCCTCTATT TCTCAACGAT CGTGCCTACC ATCCAAATTG CTTGGGTCAT GGGCATTCTC ATTCTTACCA TCTATCTCTT TTCTTTTGAA GTGGTTGGGG TGGATGTCGC AGCCATTACG GTCATGGTTC TGTTGGGTGT GAGTTCGCTA CTGGCCCCCT ATATGGGGTT AGAAGCAGGT TTAGTCAATA ACCAGCACCT TTTTAATGGT TTCTCATCTA ATGCGGTGAT CTCCATTATT GCTGTCATGA TCATTGGAGC GGGCTTGGAT AAGACGGGTG TCATGGGGAA AATGGCCGGG TTTATCCTCA AAATAGGGGG TACCACCGAA GGCCGTATCA TCCCTATTAT CTCTGGCACG GTAAGCTTTA TCTCAAGCTT TATGCAAAAC GTGGGAGCTG CGGCCCTGTT TATTCCGGTG GTAAGCCGCA TCTCCGCGCG CAGTGGTATA CCGATGTCAC GGCTGCTTAT GCCTATGGGT TTTTGTGCCA TTTTGGGTGG CACCGTAACC ATGGTTGGCT CCAGTCCGTT GATTTTGCTC AATGATCTTA TCCTCAACTC CAATGCGGCT CTACCTGCCG AGAAACAAAT GGCAACTTGG GGGCTTTTTT CCGTTACCCC AATCGGCTTG GCCTTGGTCT CAACCGGGAT TCTCTATTTT GTGTTGGCTG GCCGCTTTGT GCTCCCAGCT AGCGGGGGTA AAGGGGGGAA CGCCACCAGC CCCATGACCT ACTTTCGGGA AACCTACGGC CTAGACTACG TTATGAACGA AGTCCTCGTG CCTTCAGAAA CCTCTTTGGT CGGTAAAAAC CTGTTTGACA TCGAGCATGG AGAGTACAAA ATCCGTGTTA TCGCCGTGCA GCAAGGGCCT GGGGATATCG TCATGGGTCA CAACGGCTTG TCCCGCGAGT TTACTGTGCG TGGCGGCATG GTGCTGGGGG TTATGGGTAT CCAGTCCGAG GTTAATCGTT GGGCGAACGA CTGGGGTCTC CTGGTTCGGC AAGAGCTCAA ATCATTTCAC GAGGCTCTAT CGGCTACCAA AGCGGGTATT GCTGAGGTGG TTATCCCCCC AAGCTCTGAC TTGGTTAATA AAAGTGCCCG TGATGTATGG ATGCGGAAAA CCATGGGTCT CTCCATGATC GGTTTGCATC GTGGGGGGAA AACCTTACAG GAGGGCGATG GTATTCGTGC CATGCCGCTA CAAGCTGGCG ATACCTTGGT GGTGCATACC AGCTGGGAAA CGTTGGCGCG CATTGAAAAA GACCGCAATT TTGTGGTGGT TACCACAGAA TACCCGCGTG AAGAGTTGCG CCCCAACAAG GTAGGCTGGG CTGCTTTGTT TTTTGTTATC GCCCTCTCCA TGGTGCTGTT TAGTGATCTG CGTCTGTCGG TGGCGCTGCT TACCGGAGCG GTGGGCATGA TCCTGAGTGG CGTGTTGACC ATTGATGAAG CCTACCAAGC GGTCAGTTGG AAAACCGTCT TTCTGCTCGC TTCCTTGATC CCGCTCGGGG CTGCTGTTGA GACTTCGGGA ACGGCTGCAT GGATCGCCCG CGAGGTGCTG GCTGCCATTG GCACCCCGCC AACCTGGGTA TTGCAAGGGG TTATCGCGGT TCTCGCTACT TTCTTTACAT TGGTCATGTC CAATGTGGGC GCGACCGTAC TGCTGGTACC CTTGGCGATT AATATTGCGT TGGAGGTTGG GGCGAACCCG GCCGTATTTG CGTTGACGGT TGCCATCGCC ACCTCCAATT CGTTCCTAAT CCCTACCCAC CAGGTTAACG CCTTGATCAT GGGGCCTGCG GGCTACCGCG TGCCTGACTT CATGCGGGCA GGGGGGATCA TGACCCTACT GTTCCTGATT GTCATGATGG TTATGATGAA CTTGATTTTC TAA
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Protein sequence | MSFLNIPVKQ IVAATIFAII ALYFSTIVPT IQIAWVMGIL ILTIYLFSFE VVGVDVAAIT VMVLLGVSSL LAPYMGLEAG LVNNQHLFNG FSSNAVISII AVMIIGAGLD KTGVMGKMAG FILKIGGTTE GRIIPIISGT VSFISSFMQN VGAAALFIPV VSRISARSGI PMSRLLMPMG FCAILGGTVT MVGSSPLILL NDLILNSNAA LPAEKQMATW GLFSVTPIGL ALVSTGILYF VLAGRFVLPA SGGKGGNATS PMTYFRETYG LDYVMNEVLV PSETSLVGKN LFDIEHGEYK IRVIAVQQGP GDIVMGHNGL SREFTVRGGM VLGVMGIQSE VNRWANDWGL LVRQELKSFH EALSATKAGI AEVVIPPSSD LVNKSARDVW MRKTMGLSMI GLHRGGKTLQ EGDGIRAMPL QAGDTLVVHT SWETLARIEK DRNFVVVTTE YPREELRPNK VGWAALFFVI ALSMVLFSDL RLSVALLTGA VGMILSGVLT IDEAYQAVSW KTVFLLASLI PLGAAVETSG TAAWIAREVL AAIGTPPTWV LQGVIAVLAT FFTLVMSNVG ATVLLVPLAI NIALEVGANP AVFALTVAIA TSNSFLIPTH QVNALIMGPA GYRVPDFMRA GGIMTLLFLI VMMVMMNLIF
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