| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1712 |
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| Symbol | |
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| ID | 4481300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2116450 |
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| End bp | 2118237 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639722455 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_865627 |
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| Protein GI | 117925010 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.884408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCAC ATGTTGAAAA CCCCACTTCA TGGTTACAGC AAGAGCGCAT GTTGTATGCT
CAGCTGGCCC ATAATCCCAA TGATGGGCAG GTCTGCCTGC GTTTAGGGCA AGGTTATCTC
CAGCAGCAGC TTTGGTGGGG AGCGCTGTTT TTTTTGGATC GCGCTCTACA GATTGAGCCT
GAGCGGTTGG CTGTGCACGA TGCCTTGGGT CGGCTCTATG TGGCGCGTGG TGAGTGGTCT
AAAGCGATCG AACATTTTAC GCAGGCCATT CGGCTTGATG GGGGGCGCAC CCCCACCCAT
TGGGGTAATC GGGCCTTCTG TTATGGGCAG CTCAAGACCT ATGGGTTGGC TGCGGCGGAC
TATCGCCGGG TGGTCGAGCG TGATCCTGCC ATGGGGGGGG CTTTGGCTGA AAGTTTGTTG
CAGCAGGCCC AGCATGAATT TGCCCAGGAA CACTTTGTTG AGGCGGCGGT TCTGTTGACC
GAGGCGCAAT GTTACCGGCC AAACCATATG AAAACCCTTC TGCTTCAGGC AAGAGCTTGG
TTGAAAAGTG GCGATTTGGC CAAGGCCGCC ACCGGCTATG GGCGATTGTT GGAGCTAAAC
CCCAATCTGC CTGAAGTGCA TCACACGTTG GGCACCATTT TGGCTCAGGA TAAAGCCCAT
GCCCAACAGG CCGCTCACCA TCTGCGCCAA GCCGTAGCGT TGACGCATGG CGAGAGCCGG
GCCCTGCTCA ATCTGGCGAC GCACTTACTG AGCAATATGG ATGAAGATTT TCTGGATGAA
TCGGTGACGC TACTGCGGCA GGCTCAGGAG CAATGGCCTG ATGATGCCCT GGTGCGTTAC
AGCTTGGGCT GTGCGCTGCT ACTACAAGGG GCGTTTACCG AGGGGTGGGC ATTGTATGAG
TCCCGTTTTG CGGCTGCTGC TGCCACGCAT ACCCATCACT ACATGGAAGC CTCTCCCCCC
ACGCAACCGC TGTGGCAGGG TGAGCCCCTA CAGGGTAAAA CCTTATTGCT GGTCGGTGAG
CAGGGCTTTG GTGACCAGTT GCAGATGGCC CGTTTGATCG AGCCGCTGAA AAAGCGCTAT
GGTTGCCGTG TGCAGATGGT AACTCACCCG AGCTTGATGA CTCTGTTTGA ACAGATACCC
ACTCTGGAAC GGGTGTGGCA GCTTGGTGAG CCGCCACAGT CTGGCTATGA CTACTGGTTG
CCGATCATGA GTCTGCCACA CCGTTTGGGC ATCACATTGC CGAACATTCC GGGGCGTCTG
CCCTATCTTA ACGCGACACG TTCAGCGGTT AAGGGTTGGC AGGGCCAGTT AAAAAAAATG
AAGGGCCTTA AAGTCGGTCT GGTGTGGACC GGTAATCCGC TGCATATGAA GGCAATGCAT
AGGCGGGTAC CCTTTGAGGC GCTGACTGCA TGGGGTGAAA TAGAAGGGAT TCATTTTATC
TCCCTGCAAA AAGATCCTAT GGCTGGGGAT GAGCAGCATC CCCTATGGCA AAAGATGCAT
CACTTTGAAG CGCAACTCAC GGATTTTCAT GCCACAGCAG CCTTGATCAA GAATCTGGAT
TTAGTGATTA CCGTGGACAC AGCGGTGGCC CACTTGGCTG GCGGGTTAGG GGTACCGGTT
TGGATGATGC TCCCTTGCAA AACCGATTTT CGTTGGATGC AGCAGCGTGA GGATTCGCCC
TGGTATCCAA GCATGCGGCT TTTTAGGGGG CGCTCTTTTG AGAATCCCTG GCCCAAGGTG
ATCGAGGCGG TCGCGGTTGC CCTGCGTAAT GCAACGGGCA AGCGTTGA
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| Protein sequence | MEPHVENPTS WLQQERMLYA QLAHNPNDGQ VCLRLGQGYL QQQLWWGALF FLDRALQIEP
ERLAVHDALG RLYVARGEWS KAIEHFTQAI RLDGGRTPTH WGNRAFCYGQ LKTYGLAAAD
YRRVVERDPA MGGALAESLL QQAQHEFAQE HFVEAAVLLT EAQCYRPNHM KTLLLQARAW
LKSGDLAKAA TGYGRLLELN PNLPEVHHTL GTILAQDKAH AQQAAHHLRQ AVALTHGESR
ALLNLATHLL SNMDEDFLDE SVTLLRQAQE QWPDDALVRY SLGCALLLQG AFTEGWALYE
SRFAAAAATH THHYMEASPP TQPLWQGEPL QGKTLLLVGE QGFGDQLQMA RLIEPLKKRY
GCRVQMVTHP SLMTLFEQIP TLERVWQLGE PPQSGYDYWL PIMSLPHRLG ITLPNIPGRL
PYLNATRSAV KGWQGQLKKM KGLKVGLVWT GNPLHMKAMH RRVPFEALTA WGEIEGIHFI
SLQKDPMAGD EQHPLWQKMH HFEAQLTDFH ATAALIKNLD LVITVDTAVA HLAGGLGVPV
WMMLPCKTDF RWMQQREDSP WYPSMRLFRG RSFENPWPKV IEAVAVALRN ATGKR
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