Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1636 |
Symbol | |
ID | 4481872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 2028673 |
End bp | 2031579 |
Gene Length | 2907 bp |
Protein Length | 968 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639722379 |
Product | TPR repeat-containing protein |
Protein accession | YP_865551 |
Protein GI | 117924934 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.992619 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGAGCC CCGCCGCCCA ACTATCCCAG GCGCAAGCCT ATCTTCAGCA GGGCCAGCTG CAACAGGCGA TCAATAGCTA TCAAAATCTA TTGGCCCAGC ATCCCGAAAG TGTGGCAGCT TGGCAGGGCA TCGGCTCCGC CCTGTTGGCC GCAGGGCAGC CCCTACAGGC GGTGGATTTT TTTGAACGGG CCTTGGCCTT AGATCCGCAA CATTACCCAT CTATCCTTGC ACTTGGCACG CTTTATCAGC AGCAGGGCAG ATTGGAGAGA GCGGTACAGC TCTTTTTGCG CGGGGCGCAG TTGCAGCCCA ATCAACCGCT GGTCCACTTT AACCTTGGGG TCGTGTTGGC CGCGCAAGGA CGCACCGAAC AGGCCCAAAG CGCCTACCGC AAAGCCTTGG CACTGAACGA GAATATTCCA GAGGCGTGGC TTAACCTAGG CAACCTTCTG AGCCGTACAG GGGAGCTGCA ACAGGCCCTG GTCTGCTATC AACAGGCGTT GCAACGGCGC CCCAGCTTTA CCCAGGCAGG CTTTGGTCTC GCCAATACCC TAACCACCCT GAAACGCCAT ACAGAAGCCC TCACCATATT AGAGCCCCTC TGCCAGCAAA ACCCCGATCA CGCAGAGATG ATGATCCTCT ATGGACATCT GCTGCGCAGC CAAAACCGCC AGCATCAGGC CAGATCGGTG TTTCAACGGA TTTTGGCGCA ACAGCCCAAC CATTTTGCCG CCCGCTATGG TTATGCCACC ATTCTACTGG ACTTGGGAAG AGCCGACCTA GCCTTGCCGC AGATGCAGCA GGCCGCGCGT CTTAATCCCA GCCATCAAGG ATTAAGAAGC GATCTGGCCT TTGCGCAACA TTATCTAAGC ACCTCCCCGA AGGCTCTCTA CCATGAACAT CGGCTGTTTC AAACCCTGAT TGCCGAGGCT TTGAGCCAAC AAAGCATGCG CCACCAGCCC TGTAAAGAAC CCCATAAACC CTTAAAAATT GGCTTTGTAT CCAGTGATTT TCGCCGCCAC CCAGTCAGTT TTTTCCTGGA GGCCCCCTTT GAACACCATG ATGGTGAATC GTTCGCGTTT TACGGCTATA GCAACAGCCC CGTGCGGGAT GCCACCACCC AGCGTTTACA GGGGTGGGCG CAAGCTTGGC GAGAGATCTT TGGCTTGACC GACAGTGTGG TCGCTCAACA GATTGTGGCC GATGGGATCG ATATTTTGGT GGATCTCAAC GGCCATACTG GCGGTAATCG ACTGGCGCTG TTTGCGCTGC AACCCGCCCC GGTTCAGGTG AGTTGGCTCG GTTATCCCGA CACCACTGGC CTGGAGGCGA TGGCTTACCG ATTGACCGAC ACCATCAGCG ATCCCGAGTC TGAAGGTGGC CGCTATATGT CGGAAACCCC CATTTATCTC CCCCACGGGT TCCACTGTTA CCGTCCCCCA GATGAAGCGC CTAAGGTTTT ATACCAGCAA CTTCGCACGG GCCAAGGGGT CCGTCTTGCC AGCTTTAATA CCCTTACGAA AATGGGGCAT GAGGTGTTAC GCCTGTGGGC AGAAATCTTA ACCCGACTGC CCCAAGCGAC CCTTCTGCTA AAAAATGGCG GTTTTGGTTC GCAAGCGGTG GTGGATGACT ATCTTCAGCG TTTTGAAAGC CTTGGCATCG ACAGCAAACG CATTCGCTGC ATGGGCGTAA CCGATACCTT GGAAGAGCAT CTCAATCTCT ATAATCAGGT GGATATTGCC CTGGATACCT TTCCCTACCA TGGCACCACC ACCACCTGCG AGGCACTCTG GATGGGGGTT CCCGTGGTGA CTTTGCAGGG GGATCATCAT GTAAATCGGG TTGGCGGCTC GCTGCTGCAT CAAGTGGGGT TGCACAAATT GGTGGCCTCT ACCCCCAAAC AGTTTGTAGA TTTGGTGGTG GGGCTGGCCC AAGATCACAA ACGGTTGCGC ACGCTACGCG GCTCCATCCG TCACAAAATG CAAAACGCCC CGCTGCGTGA TGAGCTCGGT TTTACCCGCA ACCTGGAAAA CGCCTTTCGC CAGATTTGGA AGATGGCCTG CGCAACCCCC ACGGTCAGCG CCCCCCAGCC AGCCTACTGG ATGGATCTGG CTCCGGCTGA AAAAAAGCCC ACTCTTCGGT TGATCCACCA TCTGGCCCGA AGTGGCGGCA CCCTGATCTG CAAATGCCTG GGCAGCATGG AACAGGCCAT GCTACTCAGT GAAATTAATC CCAGAGGTGT GCATCGCTTC AATCCACGCC AGCAAGCCCA CCAGTGGTAC GCCGTTGGCG ATGCCAACCG TGCCGAGAGC ATGCCCTGGG ATGATGAAGA GGCCTTTTTG GAGGCGATGC AGGAGATCCA TGCCGCCGCT CAGCATCGCA ACGCCAACCT GTTGGTTCGA GACTGGACGC ACGTCGACTT TACCGGCTAC CCCTTTCGGC GTCCGCAGTG GCATTTAACG CTAGCCGAAA CCCTATCCAA GCGCTTCCGC GTCCGCTCCC TCTTTACGAC CCGCCATCCT CTGGATCAGT GGCTTTCGCT GGTTAAGTAT GCCCAGCAAG GGGGCGCTGG CGTGTCGGTC TCCCTATCCC TCTATATGGA GGGATACCGG CGCTTTGCCC AACTGTGTGC CGATCACGGT TTTGTGCGTT ATGAGGATTT TACCGTCGAT CCTGATGCCC GCCTGCAAGA GATGTGTGAA AAGCTGGAGA TACCCTTTGA TGCCGGTTAT CAACAGCGCT GGGCGAGCTA CACAAACATC ACGGGGGATA CCATCGGCAC CCGTGGTGCC CAACAGATAA AACCACTCTC CCGGCGCCCC GTAGAGGCTG GCTTACACAG GCAACTCCAA GAAAATAGCG ACTATCAGCA GATTCTTAGC CTATTGGGCT ATCAGGATGT TGAGTAA
|
Protein sequence | MESPAAQLSQ AQAYLQQGQL QQAINSYQNL LAQHPESVAA WQGIGSALLA AGQPLQAVDF FERALALDPQ HYPSILALGT LYQQQGRLER AVQLFLRGAQ LQPNQPLVHF NLGVVLAAQG RTEQAQSAYR KALALNENIP EAWLNLGNLL SRTGELQQAL VCYQQALQRR PSFTQAGFGL ANTLTTLKRH TEALTILEPL CQQNPDHAEM MILYGHLLRS QNRQHQARSV FQRILAQQPN HFAARYGYAT ILLDLGRADL ALPQMQQAAR LNPSHQGLRS DLAFAQHYLS TSPKALYHEH RLFQTLIAEA LSQQSMRHQP CKEPHKPLKI GFVSSDFRRH PVSFFLEAPF EHHDGESFAF YGYSNSPVRD ATTQRLQGWA QAWREIFGLT DSVVAQQIVA DGIDILVDLN GHTGGNRLAL FALQPAPVQV SWLGYPDTTG LEAMAYRLTD TISDPESEGG RYMSETPIYL PHGFHCYRPP DEAPKVLYQQ LRTGQGVRLA SFNTLTKMGH EVLRLWAEIL TRLPQATLLL KNGGFGSQAV VDDYLQRFES LGIDSKRIRC MGVTDTLEEH LNLYNQVDIA LDTFPYHGTT TTCEALWMGV PVVTLQGDHH VNRVGGSLLH QVGLHKLVAS TPKQFVDLVV GLAQDHKRLR TLRGSIRHKM QNAPLRDELG FTRNLENAFR QIWKMACATP TVSAPQPAYW MDLAPAEKKP TLRLIHHLAR SGGTLICKCL GSMEQAMLLS EINPRGVHRF NPRQQAHQWY AVGDANRAES MPWDDEEAFL EAMQEIHAAA QHRNANLLVR DWTHVDFTGY PFRRPQWHLT LAETLSKRFR VRSLFTTRHP LDQWLSLVKY AQQGGAGVSV SLSLYMEGYR RFAQLCADHG FVRYEDFTVD PDARLQEMCE KLEIPFDAGY QQRWASYTNI TGDTIGTRGA QQIKPLSRRP VEAGLHRQLQ ENSDYQQILS LLGYQDVE
|
| |