Gene Mmc1_1636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1636 
Symbol 
ID4481872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2028673 
End bp2031579 
Gene Length2907 bp 
Protein Length968 aa 
Translation table11 
GC content56% 
IMG OID639722379 
ProductTPR repeat-containing protein 
Protein accessionYP_865551 
Protein GI117924934 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.992619 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAGCC CCGCCGCCCA ACTATCCCAG GCGCAAGCCT ATCTTCAGCA GGGCCAGCTG 
CAACAGGCGA TCAATAGCTA TCAAAATCTA TTGGCCCAGC ATCCCGAAAG TGTGGCAGCT
TGGCAGGGCA TCGGCTCCGC CCTGTTGGCC GCAGGGCAGC CCCTACAGGC GGTGGATTTT
TTTGAACGGG CCTTGGCCTT AGATCCGCAA CATTACCCAT CTATCCTTGC ACTTGGCACG
CTTTATCAGC AGCAGGGCAG ATTGGAGAGA GCGGTACAGC TCTTTTTGCG CGGGGCGCAG
TTGCAGCCCA ATCAACCGCT GGTCCACTTT AACCTTGGGG TCGTGTTGGC CGCGCAAGGA
CGCACCGAAC AGGCCCAAAG CGCCTACCGC AAAGCCTTGG CACTGAACGA GAATATTCCA
GAGGCGTGGC TTAACCTAGG CAACCTTCTG AGCCGTACAG GGGAGCTGCA ACAGGCCCTG
GTCTGCTATC AACAGGCGTT GCAACGGCGC CCCAGCTTTA CCCAGGCAGG CTTTGGTCTC
GCCAATACCC TAACCACCCT GAAACGCCAT ACAGAAGCCC TCACCATATT AGAGCCCCTC
TGCCAGCAAA ACCCCGATCA CGCAGAGATG ATGATCCTCT ATGGACATCT GCTGCGCAGC
CAAAACCGCC AGCATCAGGC CAGATCGGTG TTTCAACGGA TTTTGGCGCA ACAGCCCAAC
CATTTTGCCG CCCGCTATGG TTATGCCACC ATTCTACTGG ACTTGGGAAG AGCCGACCTA
GCCTTGCCGC AGATGCAGCA GGCCGCGCGT CTTAATCCCA GCCATCAAGG ATTAAGAAGC
GATCTGGCCT TTGCGCAACA TTATCTAAGC ACCTCCCCGA AGGCTCTCTA CCATGAACAT
CGGCTGTTTC AAACCCTGAT TGCCGAGGCT TTGAGCCAAC AAAGCATGCG CCACCAGCCC
TGTAAAGAAC CCCATAAACC CTTAAAAATT GGCTTTGTAT CCAGTGATTT TCGCCGCCAC
CCAGTCAGTT TTTTCCTGGA GGCCCCCTTT GAACACCATG ATGGTGAATC GTTCGCGTTT
TACGGCTATA GCAACAGCCC CGTGCGGGAT GCCACCACCC AGCGTTTACA GGGGTGGGCG
CAAGCTTGGC GAGAGATCTT TGGCTTGACC GACAGTGTGG TCGCTCAACA GATTGTGGCC
GATGGGATCG ATATTTTGGT GGATCTCAAC GGCCATACTG GCGGTAATCG ACTGGCGCTG
TTTGCGCTGC AACCCGCCCC GGTTCAGGTG AGTTGGCTCG GTTATCCCGA CACCACTGGC
CTGGAGGCGA TGGCTTACCG ATTGACCGAC ACCATCAGCG ATCCCGAGTC TGAAGGTGGC
CGCTATATGT CGGAAACCCC CATTTATCTC CCCCACGGGT TCCACTGTTA CCGTCCCCCA
GATGAAGCGC CTAAGGTTTT ATACCAGCAA CTTCGCACGG GCCAAGGGGT CCGTCTTGCC
AGCTTTAATA CCCTTACGAA AATGGGGCAT GAGGTGTTAC GCCTGTGGGC AGAAATCTTA
ACCCGACTGC CCCAAGCGAC CCTTCTGCTA AAAAATGGCG GTTTTGGTTC GCAAGCGGTG
GTGGATGACT ATCTTCAGCG TTTTGAAAGC CTTGGCATCG ACAGCAAACG CATTCGCTGC
ATGGGCGTAA CCGATACCTT GGAAGAGCAT CTCAATCTCT ATAATCAGGT GGATATTGCC
CTGGATACCT TTCCCTACCA TGGCACCACC ACCACCTGCG AGGCACTCTG GATGGGGGTT
CCCGTGGTGA CTTTGCAGGG GGATCATCAT GTAAATCGGG TTGGCGGCTC GCTGCTGCAT
CAAGTGGGGT TGCACAAATT GGTGGCCTCT ACCCCCAAAC AGTTTGTAGA TTTGGTGGTG
GGGCTGGCCC AAGATCACAA ACGGTTGCGC ACGCTACGCG GCTCCATCCG TCACAAAATG
CAAAACGCCC CGCTGCGTGA TGAGCTCGGT TTTACCCGCA ACCTGGAAAA CGCCTTTCGC
CAGATTTGGA AGATGGCCTG CGCAACCCCC ACGGTCAGCG CCCCCCAGCC AGCCTACTGG
ATGGATCTGG CTCCGGCTGA AAAAAAGCCC ACTCTTCGGT TGATCCACCA TCTGGCCCGA
AGTGGCGGCA CCCTGATCTG CAAATGCCTG GGCAGCATGG AACAGGCCAT GCTACTCAGT
GAAATTAATC CCAGAGGTGT GCATCGCTTC AATCCACGCC AGCAAGCCCA CCAGTGGTAC
GCCGTTGGCG ATGCCAACCG TGCCGAGAGC ATGCCCTGGG ATGATGAAGA GGCCTTTTTG
GAGGCGATGC AGGAGATCCA TGCCGCCGCT CAGCATCGCA ACGCCAACCT GTTGGTTCGA
GACTGGACGC ACGTCGACTT TACCGGCTAC CCCTTTCGGC GTCCGCAGTG GCATTTAACG
CTAGCCGAAA CCCTATCCAA GCGCTTCCGC GTCCGCTCCC TCTTTACGAC CCGCCATCCT
CTGGATCAGT GGCTTTCGCT GGTTAAGTAT GCCCAGCAAG GGGGCGCTGG CGTGTCGGTC
TCCCTATCCC TCTATATGGA GGGATACCGG CGCTTTGCCC AACTGTGTGC CGATCACGGT
TTTGTGCGTT ATGAGGATTT TACCGTCGAT CCTGATGCCC GCCTGCAAGA GATGTGTGAA
AAGCTGGAGA TACCCTTTGA TGCCGGTTAT CAACAGCGCT GGGCGAGCTA CACAAACATC
ACGGGGGATA CCATCGGCAC CCGTGGTGCC CAACAGATAA AACCACTCTC CCGGCGCCCC
GTAGAGGCTG GCTTACACAG GCAACTCCAA GAAAATAGCG ACTATCAGCA GATTCTTAGC
CTATTGGGCT ATCAGGATGT TGAGTAA
 
Protein sequence
MESPAAQLSQ AQAYLQQGQL QQAINSYQNL LAQHPESVAA WQGIGSALLA AGQPLQAVDF 
FERALALDPQ HYPSILALGT LYQQQGRLER AVQLFLRGAQ LQPNQPLVHF NLGVVLAAQG
RTEQAQSAYR KALALNENIP EAWLNLGNLL SRTGELQQAL VCYQQALQRR PSFTQAGFGL
ANTLTTLKRH TEALTILEPL CQQNPDHAEM MILYGHLLRS QNRQHQARSV FQRILAQQPN
HFAARYGYAT ILLDLGRADL ALPQMQQAAR LNPSHQGLRS DLAFAQHYLS TSPKALYHEH
RLFQTLIAEA LSQQSMRHQP CKEPHKPLKI GFVSSDFRRH PVSFFLEAPF EHHDGESFAF
YGYSNSPVRD ATTQRLQGWA QAWREIFGLT DSVVAQQIVA DGIDILVDLN GHTGGNRLAL
FALQPAPVQV SWLGYPDTTG LEAMAYRLTD TISDPESEGG RYMSETPIYL PHGFHCYRPP
DEAPKVLYQQ LRTGQGVRLA SFNTLTKMGH EVLRLWAEIL TRLPQATLLL KNGGFGSQAV
VDDYLQRFES LGIDSKRIRC MGVTDTLEEH LNLYNQVDIA LDTFPYHGTT TTCEALWMGV
PVVTLQGDHH VNRVGGSLLH QVGLHKLVAS TPKQFVDLVV GLAQDHKRLR TLRGSIRHKM
QNAPLRDELG FTRNLENAFR QIWKMACATP TVSAPQPAYW MDLAPAEKKP TLRLIHHLAR
SGGTLICKCL GSMEQAMLLS EINPRGVHRF NPRQQAHQWY AVGDANRAES MPWDDEEAFL
EAMQEIHAAA QHRNANLLVR DWTHVDFTGY PFRRPQWHLT LAETLSKRFR VRSLFTTRHP
LDQWLSLVKY AQQGGAGVSV SLSLYMEGYR RFAQLCADHG FVRYEDFTVD PDARLQEMCE
KLEIPFDAGY QQRWASYTNI TGDTIGTRGA QQIKPLSRRP VEAGLHRQLQ ENSDYQQILS
LLGYQDVE