Gene Mmc1_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1605 
Symbol 
ID4481573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp1985917 
End bp1987989 
Gene Length2073 bp 
Protein Length690 aa 
Translation table11 
GC content59% 
IMG OID639722347 
Productshort chain dehydrogenase 
Protein accessionYP_865520 
Protein GI117924903 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.043834 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAATC TCTGGTCCGA GCGTGACGCC GCCCAACTGT CAACCACCTA TGCCCCCAGT 
GTTGGAGAAG CCCTGGCGCT GCGCACCTAC AGCAGCCATC TATTGGGTAG CGAACTTGCT
TTGGTACGAC ATGGCGGGGG CAACACCTCG GTTAAAGTCG AAGGTCAGGA TCTGTTCGGC
AATACCCGCT CTATTTTGCA CATCAAGGGC TCGGGGCGAG ACCTAGCAAC CTTACAGCCG
CGTGACCACG TGGCCATGGA TCTGGAATCC CTCAAGGCAC TGCGTCATCT GCCTCACCTT
GCAACCGAAC AGATGCGCAA TCAATTGGCC CAGCTACGTC TACATCATGA CGACCCCATG
CCCAGCATCG AAACCCTGCT GCATGCTTGG CTACCAGCCA CCTACGTTGA CCATACCCAT
GCCGAGGCCA TCCTGGCCCT CACCAATCGG CAGGACGGTG AACAGGTGGT ACGTCAAGCG
CTAGGGGATG CACTCCTCAT TGTGCCCTAT ATGCACCCCG GTTTTGAGCT GGCGGTGGCG
GCCCTGGACG CCTTTGACCA ACATCCCCAG GCTATAGGTA TGGTGCTTAT GGGCCATGGT
TTAGTGACCT GGGCAGAGCA TGCCCAAGCC AGCTACAACC GCACCCTTGA ACTGGTCACA
CGAGCTGAAC AGTGGATTGC CCGCCAAGCC AGCCACGCCA CCCCTCTGAG CGTGGATGTG
GCGCAGGCTC AGCGTACTTA TACCGCACTT GCCCCCAAAC TGCGGGGCTT ACTCAGCCCA
CCACAGAGCA ATCGCGCCTT CCCTCGGCAA CGCACCATTA TCACCCCCAT TATCCACCAC
GACATGCTGC AAGCCTTGGC CGCAGAGGGG GCCGAGGCGC TACTTACTAC CCCCCCCATC
ACCTCAGATT ATGTGCTCCG CATGAAACCC TGGCCCCTGT GGCTGGACAA CCTGGAACAG
GCCGAGGCAC GCATCGCAGC CTTTCAGCAA CGCTATACGG CCTATCTCCA CACCCATGGG
GGAGCACAGC CACCCACGCC GCAACATGCC CTGCCCCATG TGGTTTTTAT ACCCGGTGTA
GGTGCCCTAT GTGTGGCTCA AACGTTACAG GAGTCGGCAA TTTTAGCCGA CCTAACCGAG
CAAAATGTGC GCGTTAAGCA GGCGGTTAAA GCCAGTGGCG GCACCTATAA CCCCTTATCA
GAACAGGCTT GTTTTGATAT GGAATATTTC CTGCTTCAAC GGGATAAAGT GGCGACCCCC
ACGGCCCTAC CGCTCACCGG TAGCACCGCT GTTGTTACCG GGGCGGCGGG GGCCATTGGT
TCGGGCATCG TGCGCCATTT GCTGGACTTG GGGGCCTGTG TGGCGGCCAC CGATCTGGCC
GGGGCCGCCT TAGAGAGTTT GATCACGGAG TTAAAACCCC AGTATGGCAA GCGGCTGTTG
GGCATCCCCA TGGATGTCAC CGCGCCGACA GCCATACAGC AGGGTTGGGA GCGCATCATC
ACCCATTGGG GCGGGGTGGA TCTGCTGGTG ATCAACGCCG GTTTGGCCCA CGTCGCACCC
CTGGCGCAGT TGGAGATGGA TAAATTCACC CTGCTGCATA AGGTAAATGT TGAGGGCACC
CTTAATCTGC TGAAACAGGC GGCTCACCAC TACGAAAACA TGCAGATGGG GGGGGATATT
GTGCTTATCT CCACCAAAAA TGTGTTTGCC CCAGGGGCCA GTTTTGGTGC CTATAGCGCC
ACCAAGGCGG CCAGCCATCA ACTGGCCCGT ATTGCCTCTT TGGAGTTGGC GGGTATCGGG
GTGCGGGTCA ACATGGTGGC CCCGGATGCG GTCTTTTCTG ATGGCCAGCG CGCCTCGGGT
CTATGGGCCA CGGTGGGGCC GGATCGCATG AAAGCACGGG GGTTGGATCA AGCGGGCTTA
GAGGCGTATT ACCGCAATCG CAACCTGTTA AAAGAAAAGA TTACCGCAGA GGATGTGGCC
CATGCTGTGG CCTACTTTGC GACCCGGCAA TCCCCCACCA CGGGGGCGAC GCTACCGGTG
GATGGCGGTC TGCCCGACGC CACCCCAAGA TAA
 
Protein sequence
MQNLWSERDA AQLSTTYAPS VGEALALRTY SSHLLGSELA LVRHGGGNTS VKVEGQDLFG 
NTRSILHIKG SGRDLATLQP RDHVAMDLES LKALRHLPHL ATEQMRNQLA QLRLHHDDPM
PSIETLLHAW LPATYVDHTH AEAILALTNR QDGEQVVRQA LGDALLIVPY MHPGFELAVA
ALDAFDQHPQ AIGMVLMGHG LVTWAEHAQA SYNRTLELVT RAEQWIARQA SHATPLSVDV
AQAQRTYTAL APKLRGLLSP PQSNRAFPRQ RTIITPIIHH DMLQALAAEG AEALLTTPPI
TSDYVLRMKP WPLWLDNLEQ AEARIAAFQQ RYTAYLHTHG GAQPPTPQHA LPHVVFIPGV
GALCVAQTLQ ESAILADLTE QNVRVKQAVK ASGGTYNPLS EQACFDMEYF LLQRDKVATP
TALPLTGSTA VVTGAAGAIG SGIVRHLLDL GACVAATDLA GAALESLITE LKPQYGKRLL
GIPMDVTAPT AIQQGWERII THWGGVDLLV INAGLAHVAP LAQLEMDKFT LLHKVNVEGT
LNLLKQAAHH YENMQMGGDI VLISTKNVFA PGASFGAYSA TKAASHQLAR IASLELAGIG
VRVNMVAPDA VFSDGQRASG LWATVGPDRM KARGLDQAGL EAYYRNRNLL KEKITAEDVA
HAVAYFATRQ SPTTGATLPV DGGLPDATPR