Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1605 |
Symbol | |
ID | 4481573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 1985917 |
End bp | 1987989 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639722347 |
Product | short chain dehydrogenase |
Protein accession | YP_865520 |
Protein GI | 117924903 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only [S] Function unknown |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [COG3347] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.043834 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGAATC TCTGGTCCGA GCGTGACGCC GCCCAACTGT CAACCACCTA TGCCCCCAGT GTTGGAGAAG CCCTGGCGCT GCGCACCTAC AGCAGCCATC TATTGGGTAG CGAACTTGCT TTGGTACGAC ATGGCGGGGG CAACACCTCG GTTAAAGTCG AAGGTCAGGA TCTGTTCGGC AATACCCGCT CTATTTTGCA CATCAAGGGC TCGGGGCGAG ACCTAGCAAC CTTACAGCCG CGTGACCACG TGGCCATGGA TCTGGAATCC CTCAAGGCAC TGCGTCATCT GCCTCACCTT GCAACCGAAC AGATGCGCAA TCAATTGGCC CAGCTACGTC TACATCATGA CGACCCCATG CCCAGCATCG AAACCCTGCT GCATGCTTGG CTACCAGCCA CCTACGTTGA CCATACCCAT GCCGAGGCCA TCCTGGCCCT CACCAATCGG CAGGACGGTG AACAGGTGGT ACGTCAAGCG CTAGGGGATG CACTCCTCAT TGTGCCCTAT ATGCACCCCG GTTTTGAGCT GGCGGTGGCG GCCCTGGACG CCTTTGACCA ACATCCCCAG GCTATAGGTA TGGTGCTTAT GGGCCATGGT TTAGTGACCT GGGCAGAGCA TGCCCAAGCC AGCTACAACC GCACCCTTGA ACTGGTCACA CGAGCTGAAC AGTGGATTGC CCGCCAAGCC AGCCACGCCA CCCCTCTGAG CGTGGATGTG GCGCAGGCTC AGCGTACTTA TACCGCACTT GCCCCCAAAC TGCGGGGCTT ACTCAGCCCA CCACAGAGCA ATCGCGCCTT CCCTCGGCAA CGCACCATTA TCACCCCCAT TATCCACCAC GACATGCTGC AAGCCTTGGC CGCAGAGGGG GCCGAGGCGC TACTTACTAC CCCCCCCATC ACCTCAGATT ATGTGCTCCG CATGAAACCC TGGCCCCTGT GGCTGGACAA CCTGGAACAG GCCGAGGCAC GCATCGCAGC CTTTCAGCAA CGCTATACGG CCTATCTCCA CACCCATGGG GGAGCACAGC CACCCACGCC GCAACATGCC CTGCCCCATG TGGTTTTTAT ACCCGGTGTA GGTGCCCTAT GTGTGGCTCA AACGTTACAG GAGTCGGCAA TTTTAGCCGA CCTAACCGAG CAAAATGTGC GCGTTAAGCA GGCGGTTAAA GCCAGTGGCG GCACCTATAA CCCCTTATCA GAACAGGCTT GTTTTGATAT GGAATATTTC CTGCTTCAAC GGGATAAAGT GGCGACCCCC ACGGCCCTAC CGCTCACCGG TAGCACCGCT GTTGTTACCG GGGCGGCGGG GGCCATTGGT TCGGGCATCG TGCGCCATTT GCTGGACTTG GGGGCCTGTG TGGCGGCCAC CGATCTGGCC GGGGCCGCCT TAGAGAGTTT GATCACGGAG TTAAAACCCC AGTATGGCAA GCGGCTGTTG GGCATCCCCA TGGATGTCAC CGCGCCGACA GCCATACAGC AGGGTTGGGA GCGCATCATC ACCCATTGGG GCGGGGTGGA TCTGCTGGTG ATCAACGCCG GTTTGGCCCA CGTCGCACCC CTGGCGCAGT TGGAGATGGA TAAATTCACC CTGCTGCATA AGGTAAATGT TGAGGGCACC CTTAATCTGC TGAAACAGGC GGCTCACCAC TACGAAAACA TGCAGATGGG GGGGGATATT GTGCTTATCT CCACCAAAAA TGTGTTTGCC CCAGGGGCCA GTTTTGGTGC CTATAGCGCC ACCAAGGCGG CCAGCCATCA ACTGGCCCGT ATTGCCTCTT TGGAGTTGGC GGGTATCGGG GTGCGGGTCA ACATGGTGGC CCCGGATGCG GTCTTTTCTG ATGGCCAGCG CGCCTCGGGT CTATGGGCCA CGGTGGGGCC GGATCGCATG AAAGCACGGG GGTTGGATCA AGCGGGCTTA GAGGCGTATT ACCGCAATCG CAACCTGTTA AAAGAAAAGA TTACCGCAGA GGATGTGGCC CATGCTGTGG CCTACTTTGC GACCCGGCAA TCCCCCACCA CGGGGGCGAC GCTACCGGTG GATGGCGGTC TGCCCGACGC CACCCCAAGA TAA
|
Protein sequence | MQNLWSERDA AQLSTTYAPS VGEALALRTY SSHLLGSELA LVRHGGGNTS VKVEGQDLFG NTRSILHIKG SGRDLATLQP RDHVAMDLES LKALRHLPHL ATEQMRNQLA QLRLHHDDPM PSIETLLHAW LPATYVDHTH AEAILALTNR QDGEQVVRQA LGDALLIVPY MHPGFELAVA ALDAFDQHPQ AIGMVLMGHG LVTWAEHAQA SYNRTLELVT RAEQWIARQA SHATPLSVDV AQAQRTYTAL APKLRGLLSP PQSNRAFPRQ RTIITPIIHH DMLQALAAEG AEALLTTPPI TSDYVLRMKP WPLWLDNLEQ AEARIAAFQQ RYTAYLHTHG GAQPPTPQHA LPHVVFIPGV GALCVAQTLQ ESAILADLTE QNVRVKQAVK ASGGTYNPLS EQACFDMEYF LLQRDKVATP TALPLTGSTA VVTGAAGAIG SGIVRHLLDL GACVAATDLA GAALESLITE LKPQYGKRLL GIPMDVTAPT AIQQGWERII THWGGVDLLV INAGLAHVAP LAQLEMDKFT LLHKVNVEGT LNLLKQAAHH YENMQMGGDI VLISTKNVFA PGASFGAYSA TKAASHQLAR IASLELAGIG VRVNMVAPDA VFSDGQRASG LWATVGPDRM KARGLDQAGL EAYYRNRNLL KEKITAEDVA HAVAYFATRQ SPTTGATLPV DGGLPDATPR
|
| |