| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1520 |
|---|
| Symbol | |
|---|
| ID | 4482567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1861081 |
|---|
| End bp | 1863570 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639722262 |
|---|
| Product | glycogen/starch/alpha-glucan phosphorylases |
|---|
| Protein accession | YP_865435 |
|---|
| Protein GI | 117924818 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0549278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGG ACGAGCAACT TTCCGAATCC TCGGTACACG AGCATGACCG CCCCGACTGG
AACGCCACCT TCATCAAAGA GAAGTTGGTC AACTACATGG TCCATGATGT CGGTAAAGAT
CCCGATATTG CCAGCGAACG CGACTGGTAC TACGCCGTTG TCTATTTTGT ACGTGGTGTA
TTAAGCGAGC GACGCATTCG CCAAAACCGC TACCTGCGTG ATGAAAAAGG GCGCCGTGTT
TATTATCTTT CCATGGAATA TTTGATCGGG CGCAACCTCA TGCGCACGGT ATTGGATTTA
GATTTAAACA TCTTGTTACG TGAAGCCCTG TCAGAATTTG AGCAGGATCT GGACACCATT
GTCGCTTGCG AGGTTGATGC AGCCTTGGGC AACGGTGGTC TAGGACGTCT GGCTGCTTGT
ATTTTAGACT CCATTGCCAA CCAAAGCTTC CCTGGCATGG GCTACGGCAT TCGCTATGAG
TTTGGCATGT TTAGCCAGTC CATTGAAGAG GGTATGCAGG TTGAACACCC CGAACATTGG
CTGCGTCATG GCAACCCCTG GGAGTTTGAG CAGCCCAACG TAAAATATCG GGTCCGCTTT
AACGGTAAGA TTCTCTGTTT TAAAGATGCC GATGGCAACG ACACCTGCCA GTGGGTAGAC
ACCAAAGATG TGGTGGCCTT GGCCTTTGAC GTGCCCCTCT CCGGCCATAA AACCCCCAGC
ATTACCAACT TGCGACTTTG GTCGGCGCGG GCTACCCGTG ACTTTGATCT AAGCTACTTC
AACGAAGGCA ACTATGTTGA GGCGGTTAAG GATAAAGCGG TTTCTGAGAA CCTTTCCAAA
GTGCTCTACC CCAATGACTC CACCTTGCGC GGGCAGGAGT TACGGCTCAA GCAGGAGTAT
TTCTTTGTCA GCTCCTCCTT ACAAGACATT ATGGAGCGCT TTAAGCTAGA GAATGGCGAT
ATTCGCCAGT TCCCTAAGCG CGTGGTCATC CACCTTAACG ACACCCACCC CTCGCTGGCG
GTACCCGAAC TGCTGCGTCT GTTCTGCGAT GAGTACGGTT TGGAGTTTGA CGAAGCCTGG
GACCTCTGCC GTCAAACCTT TACCTATACC AACCACACCC TGCTGCCCGA GGCGTTGGAG
ACGTGGCCCA TCGCCATTAT GGAGCATGTA CTGCCCCGCC ATTTACAGAT TCTCTACAAG
ATCAACCATC AGCATCTTAA AGAGGTCAAA CACCGCTACC CAGGGAATAG CACCATCCTG
AGCCGCATGT CACTCATTGA TGATGTGAGC AAGCGGGTAC GCATGGCCCA CGTCTGTATT
GTGGGTAGCT ATTCGGTCAA TGGTGTGGCG GAGCTGCACT CGCGTCTTAT GCAGGCGGGC
ATGTTCAAAG ACTTCAAAGA GATGCGTCCT GGTGTCTTTA CCAACGTCAC CAACGGTATT
GATCAGCATC GCTGGCTCAA CATGTCCAAC CCCGGGCTCT CTGCTTTGAT CAAGGAGAGC
ATTGGCGACA AATGGGTTTC GGATCTACCC GCCTTGGTTG AACTGGCCCC CTTGGCCGAT
GATGCGGGGT TCCGTCGCCA GTTCCATGAT ATTAAGCGGG CCAACAAAGT GCGTCTGGCC
CAATTGGTGG CCCGTAAAAC TGGGGTAGAG CTTGACCCTT CCTCCATGTT TGATGTCCAG
GTCAAACGTA TTCACGAGTA TAAGCGCCAG TTGCTTAACC TTATGCATGT GGTAACCCGC
TACATTCGTA TCCGGGATGG GGTCGAGAAT GATATGGTGC CCCGTTCGGT CATTATTGGT
GGCAAGGCGG CACCGGGCTA CCACATTGCC AAGCAGATTA TCCGCTTAAT CAATGATGTC
GCCAGCACCA TCAACAATGA TCCGGCGATC AAGGGCCTGC TTAAGCTGGT CTTTTTGCCC
AACTACAATG TCTCCAAAGC CGAGATCATC ATGCCTGGCT CAGAACTTTC TGAGCAGATT
TCCACACCGG GCATGGAAGC CTCGGGCACG GGCAATATGA AGTTTGCCCT AAACGGTGCG
CTAACCATTG GCACCCTGGA TGGGGCAAAC ATTGAGATCT TGGAAGAGGT GGGGGATGAT
AACATCTTCA TCTTTGGTAT GACGGCAGAT GAGGCCCACG ATCTTCGCGC TGGCGGCTAT
GATCCCACCC TCTATTTTGA GAAAAATGCC GAGCTGCGCC GGGTGTTAGA GATGATCCGC
GATGGTTTCT TCTGCCCGGA CGATCCCGGT CGTTATAGCG ATCTGTACAA CAACCTGCTG
TTTGGTGGTG ACCACTTTTT GCTCTTAGCC GACTATGAAG CCTACATTGC CTGTCAAAAA
CAGGTGGAGG CCACCTATAG CAACCAGGAT CGGTGGAACC GCATGGCTGT GCTCAATACC
GCCAATATGG GTAAATTTTC CATTGACCGT ACCGTGCGCA CCTATGCGGA AAATGTTTGG
AAAGTCAAAC CCATGCAGCT TAAACGCTAA
|
|---|
| Protein sequence | MTLDEQLSES SVHEHDRPDW NATFIKEKLV NYMVHDVGKD PDIASERDWY YAVVYFVRGV
LSERRIRQNR YLRDEKGRRV YYLSMEYLIG RNLMRTVLDL DLNILLREAL SEFEQDLDTI
VACEVDAALG NGGLGRLAAC ILDSIANQSF PGMGYGIRYE FGMFSQSIEE GMQVEHPEHW
LRHGNPWEFE QPNVKYRVRF NGKILCFKDA DGNDTCQWVD TKDVVALAFD VPLSGHKTPS
ITNLRLWSAR ATRDFDLSYF NEGNYVEAVK DKAVSENLSK VLYPNDSTLR GQELRLKQEY
FFVSSSLQDI MERFKLENGD IRQFPKRVVI HLNDTHPSLA VPELLRLFCD EYGLEFDEAW
DLCRQTFTYT NHTLLPEALE TWPIAIMEHV LPRHLQILYK INHQHLKEVK HRYPGNSTIL
SRMSLIDDVS KRVRMAHVCI VGSYSVNGVA ELHSRLMQAG MFKDFKEMRP GVFTNVTNGI
DQHRWLNMSN PGLSALIKES IGDKWVSDLP ALVELAPLAD DAGFRRQFHD IKRANKVRLA
QLVARKTGVE LDPSSMFDVQ VKRIHEYKRQ LLNLMHVVTR YIRIRDGVEN DMVPRSVIIG
GKAAPGYHIA KQIIRLINDV ASTINNDPAI KGLLKLVFLP NYNVSKAEII MPGSELSEQI
STPGMEASGT GNMKFALNGA LTIGTLDGAN IEILEEVGDD NIFIFGMTAD EAHDLRAGGY
DPTLYFEKNA ELRRVLEMIR DGFFCPDDPG RYSDLYNNLL FGGDHFLLLA DYEAYIACQK
QVEATYSNQD RWNRMAVLNT ANMGKFSIDR TVRTYAENVW KVKPMQLKR
|
|---|
| |