| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1479 |
|---|
| Symbol | |
|---|
| ID | 4483092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1806772 |
|---|
| End bp | 1808694 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639722221 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_865394 |
|---|
| Protein GI | 117924777 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0522747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0374393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACA ATTTACGACT GTGGGCCAAC ATTATGATTG GCATGGGGTT CGCCATCGCC
TTTGTGGTGA TTGGGCTGAT CGTGACCGGT CTAAACAACC TGGAAGGGGT GATTTTGCGT
TCAGAAGAGG CTCAACTGCG GGAACGTGCC GAATCTGTCA TTACTCAAGT CCAAAGTGAA
ACCCGCTTGG CTCAGGCGCT CAGCGCCTTG GTTGCCCATA TCCCTTTGGT GCAGGAAAAA
TTTGAACAGG GAGATCGCGC TTGGTTGGCT CAGCAGTTGG AACCCGCTTA TCAAGTGATC
GCCCGAGATT TTGGCGCAAA ACAGTTTCAA TTCCATACCC CCCCAGCGTT CTCCTTCTTG
CGGCTGCATA AGCCAGAGAA ATTTGGCGAT GACCTCTCAT CATTTCGTCA TATGGTGGTA
AATACCAATG AAAAAAAGAG CGCTAGCCAA GGGTTAGAGA GCGGTGTGGC CGGTTTAGGG
GCGCGGGGCA TTGTGCCAGT TTTCCATGGG GAAAAACATC TGGGTTCGGT AGAGTTTGGC
ATGTCCTTTG GCCCAGCTTT TTTCACCGCA TTTAAGCAAA AACATGGGGC CGATGCCGCC
CTTTATCTGT TTAAAGAGGG AAAATTTATT ACCTTCGCCT CAACCATGCC CGAGGCGCTG
TTGCAGCCGC AGGAGCTTAA ACAAGCCTAC GCAGGCAAAC GGGTCTATAC CCGCCGAGCC
TTCAATGCTA CCCCCTATGC CATTTATGGC ACCATGGTGA AGGATTACTC GGGCACGCCA
CTGGGGGTGG TCGAAATCGC GATGAACCGT TCGGCACATG TGGCCGCCTT TGCCAAAGCG
CGCAATCAAG CCTGGATCAT TGGGGGTTTG GCGCTGCTGG TGGGGCTCTT GCTGGCGTTG
TTGACGGCGC GGGCGTTGGG GCGGCGTATC CGGGCGTTGG TGCAGGGCGT CAACCTGTTG
GCCGAAGGCA ACCTCACCGT TTCACTGCCC AGCGATGGCC AAAATGAGAT TGCCGAGCTG
GGCCGCGCCA CCGAAGAGAT GCGCAGCTAT CTGCATGATC TGGTATCAAA AGTTGAGCAT
AATGCATCGG CTGTAAACCA TGCCAGCCGT GAGATCGCCA CCTCCGTGGA GCGCCAAGCG
GCAACCTCTA GCGGTATGTC GGCCTCGGTC GCGGAAATTA CCTCCACCAT GGAAGAGTTG
TCGGCGTCAT CCTCACAAAT CGCTGAGTAT TCTGAAAAGG TGGTGGTTAT TGCCAACCAA
ACCTGGGAAA GTAGTAAAGA GGGCTCCCTT GCGATGCAGT CCATCGTCAC CAAGATGGAG
GATATTAAGA GCGATAACGA GAAAAGTTTG GCCGAAATTG TTGATCTGGG AAGTAAATCC
AAAGAGATCA GCAAGGTTAT GGAAATTATC AATAACATTG CCGATCAGAC CAAATTAATC
GCCTTTAATG CCGCGCTGGA GGCCTCCAGT GCCGGTGAAT CGGGGCAACG CTTTGGCGTG
GTGGCTGCTG AGATCCGCCG TCTGGCCGAT AGCGTGACCG AGTCCACCAG CGAAATTGAG
CGAAAAACCC GTGAGATCCA GGACTCCATC AGCCGTTTGG TGATTACCTC AGAAAAGGGT
GCATTGGGTA TTACTGAGGG CATGCGTGAA TCTTTTCAGA CCGCCACACG ACTCAATGAA
TTGGTGGATG CTGCCAGCCG TTCAACCAAA TCGGCCAAGC AGATCTCTCT TTCGACCCAG
CAGCAGAAGA CCGCCAGCAG TCAGGTGGTG GTGGCCTTGC GGGAAATAGT GACCGCCAGT
AGCAACACGG CAGATGCGGT GGAGCATATC GCCCAGATCG CTAACCAGAT GACCGATGTT
TCTAGTGAAC TTAAAGCACA AGTCGGTCGT TTCATTTTAC ATGAGGATCA ACATAGCCAT
TAA
|
|---|
| Protein sequence | MFNNLRLWAN IMIGMGFAIA FVVIGLIVTG LNNLEGVILR SEEAQLRERA ESVITQVQSE
TRLAQALSAL VAHIPLVQEK FEQGDRAWLA QQLEPAYQVI ARDFGAKQFQ FHTPPAFSFL
RLHKPEKFGD DLSSFRHMVV NTNEKKSASQ GLESGVAGLG ARGIVPVFHG EKHLGSVEFG
MSFGPAFFTA FKQKHGADAA LYLFKEGKFI TFASTMPEAL LQPQELKQAY AGKRVYTRRA
FNATPYAIYG TMVKDYSGTP LGVVEIAMNR SAHVAAFAKA RNQAWIIGGL ALLVGLLLAL
LTARALGRRI RALVQGVNLL AEGNLTVSLP SDGQNEIAEL GRATEEMRSY LHDLVSKVEH
NASAVNHASR EIATSVERQA ATSSGMSASV AEITSTMEEL SASSSQIAEY SEKVVVIANQ
TWESSKEGSL AMQSIVTKME DIKSDNEKSL AEIVDLGSKS KEISKVMEII NNIADQTKLI
AFNAALEASS AGESGQRFGV VAAEIRRLAD SVTESTSEIE RKTREIQDSI SRLVITSEKG
ALGITEGMRE SFQTATRLNE LVDAASRSTK SAKQISLSTQ QQKTASSQVV VALREIVTAS
SNTADAVEHI AQIANQMTDV SSELKAQVGR FILHEDQHSH
|
|---|
| |