| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1460 |
|---|
| Symbol | |
|---|
| ID | 4481515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1779205 |
|---|
| End bp | 1781526 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639722201 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_865375 |
|---|
| Protein GI | 117924758 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0675238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.590936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA TTGCTCAACG TATTGCCTTA AGCCTCGATG TTCGTGAAAA TCAGGTTGTA
GCGGCCATCA ACCTACTGGA TGAGGGGGCC ACGGTGCCCT TTATTGCCCG CTACCGCAAA
GAGGTAACGG GTGGCTTGAG TGATATCCAC TTGCGGGATC TGTTGGGCCT GCTCACCCAG
CTCCGAGAGC TTGAAGCCCG CCGCGAGGTG GTCTTAAAGT CGATCCAGGA GCAGGAGAAG
CTTACCCCGC AGTTGGAGCG CGCCATTCAA GAGGCCGAGA GCAAAACCGT GCTGGAAGAT
CTCTATCTAC CCTATCGCCC CAAGCGCCGC ACCAAAGCAC AGATTGCCCG TGAAGCAGGC
TTAGCACCGC TGGCCGAAAC ACTGTTCAAG CAGCCCGAGC ACCACCCTGC CCGGTTGGCG
GCCAACTACC TTAACCCTGA ACAGGGCATT ACCGATGTAG AGGCTGCTCT GGAGGGTGCC
CAACAAATTT TGATTGAGCA ATTCACCGAA GAGGCCTCCC TGGTTGGACA AGCCCGCGAA
AGTCTATGGG AGAGTGGGCT GCTGCACGCC AAAGTGGTAA AGGGCAAGGA GCTAGAGGGG
GAGAAATTTG CGGACTATTT TGAGTTTGAA CAACCGGTTA ACCGGCTTCC TTCGCACCGC
ATTTTGGCCC TGCTACGGGG CAAAGAGGCG GGCATATTAC GCCTAAGTCT AAGCCATCGT
CAGGATGCCC AGGCGCAAAA GGGGGCCATG CCCTTTGGTG CTTTATTGAT CTGCCGCCAT
TTTAAGCTGG AAAATCATAA CCGTCCGGCG GACCTTTGGC GGCAGAGCTG TGGGGTGGAA
GCGTGGAAAA AACGCCTGAA ACCCAGCCTG GATAGCGACC TGCTGAAACG CCTGACGGAG
CTGGCTCAGG CAGAGGCGGT ACGGGTTTTT GCGGCCAATC TCAAGGATTT GCTGCTCTCG
GCACCGGCGG GTATGGTGCC GGTTATGGGG TTGGATCCGG GTCTGCGCAC CGGGGTTAAA
GTGGCGGTGG TGGATGCCAC TGGTCAGGTA CAGACCACCG CCACGATCTA CCCCCACCAA
CCCCGCAATG ACTGGGAGGG GTCTATTAAG GCCCTTAGCC TGCTCATTAA AAAGTACAAA
GTGCCACTGA TTGCCATTGG TAATGGCACC GCCTCCCGCG AGACCGACCG ACTGGTGGCG
GAGTTAAACC GACGCCACCC CGATTTAAAA GTCACGGCGG TGGTGGTGAG CGAAGCGGGG
GCCTCGGTCT ATTCGGCCTC GGCCTATGCC TCCCAGGAGC TCCCGGAGAT GGATGTCTCC
TTACGTGGTG CGGTCTCGAT TGCGCGGCGC TTGCAAGATC CCTTGGCGGA GTTGGTTAAG
ATTGATCCCA AATCCATTGG CGTGGGACAA TATCAGCATG ATGTGGATCC CAAACAGTTG
GATCAAGCCC TGGATGGAGT GGTGGAAGAT GCGGTGAACA GTGTGGGGGT GGATGTCAAT
ACCGCCTCGA TCCCCTTGCT CCAGCGGGTT TCGGGGCTCA ACAGCACGCT GGCCCAAAAC
ATTGTGGCCT TTCGTGATAA AAACGGCCCT TTTGCCAACC GTAAAGGACT TAACAAGGTG
CCCCGTTTTG GGGCCAAAAC CTTTGAGCTG GCCGCAGGCT TTTTACGCAT CCAAAATGGC
GACACCCCCT TGGATGGCTC GGCGGTACAC CCCGAGGCCT ACCCTTTGGT GGAGCGCATT
GTACGGCAGA CCCGCACCAC CCTGCCCCAG CTCATGGGCC ATCCAGAGGT GCTCAAGCAG
TTAACCCCCA AGGATTTTGT GGATACTCAA TTTGGGGAAC CCACCATTCG GGATATTCTC
AAAGAGTTGG AAAAGCCGGG GCGCGACCCC CGCCCTAGTT TTAAAACCGC CACCTTCCAA
GAGGGGGTGG AGGATATTAA GGATCTTCAA CCGGGCATGG TGCTGGAAGG GGTGGTGAGT
AACGTCACCA ATTTTGGGGC CTTTGTGGAT ATTGGTGTGC ATCAGGATGG TTTGGTGCAT
ATCTCGGCCA TGTCCAACCA ATTTGTCAAA GATCCCCACC AAGTGACCCG CGCCGGGGCG
GTGGTGCAGG TCAAGGTGAT GGAGATTGAC CTTAATCGAC GGCGCATCGC CCTAAGCATG
CGGTTAGAGG ATCAACCCGG CGCGGAGGCC AGCCAAGCCA CGGCCCAGAG CGCCACCCCA
CACAAGGGCG GCGCTCCCAC TAAACGCCCC ACTGCCCCAC CGCAGGCGCC CCCCGATAAC
GCCATGGCAG CCGCTTTTGC CAAGTTAAAA CAAGGAGGCT AA
|
|---|
| Protein sequence | MKSIAQRIAL SLDVRENQVV AAINLLDEGA TVPFIARYRK EVTGGLSDIH LRDLLGLLTQ
LRELEARREV VLKSIQEQEK LTPQLERAIQ EAESKTVLED LYLPYRPKRR TKAQIAREAG
LAPLAETLFK QPEHHPARLA ANYLNPEQGI TDVEAALEGA QQILIEQFTE EASLVGQARE
SLWESGLLHA KVVKGKELEG EKFADYFEFE QPVNRLPSHR ILALLRGKEA GILRLSLSHR
QDAQAQKGAM PFGALLICRH FKLENHNRPA DLWRQSCGVE AWKKRLKPSL DSDLLKRLTE
LAQAEAVRVF AANLKDLLLS APAGMVPVMG LDPGLRTGVK VAVVDATGQV QTTATIYPHQ
PRNDWEGSIK ALSLLIKKYK VPLIAIGNGT ASRETDRLVA ELNRRHPDLK VTAVVVSEAG
ASVYSASAYA SQELPEMDVS LRGAVSIARR LQDPLAELVK IDPKSIGVGQ YQHDVDPKQL
DQALDGVVED AVNSVGVDVN TASIPLLQRV SGLNSTLAQN IVAFRDKNGP FANRKGLNKV
PRFGAKTFEL AAGFLRIQNG DTPLDGSAVH PEAYPLVERI VRQTRTTLPQ LMGHPEVLKQ
LTPKDFVDTQ FGEPTIRDIL KELEKPGRDP RPSFKTATFQ EGVEDIKDLQ PGMVLEGVVS
NVTNFGAFVD IGVHQDGLVH ISAMSNQFVK DPHQVTRAGA VVQVKVMEID LNRRRIALSM
RLEDQPGAEA SQATAQSATP HKGGAPTKRP TAPPQAPPDN AMAAAFAKLK QGG
|
|---|
| |