| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1449 |
|---|
| Symbol | |
|---|
| ID | 4480625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1761348 |
|---|
| End bp | 1763954 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639722190 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_865364 |
|---|
| Protein GI | 117924747 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000177149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.302427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCC CCAAACAGAC CCCCATGATC GCCCAGTATC TGAGCATCAA GGCCGCCCAT
CCGGAGACCT TGCTGTTTTT TCGTATGGGG GATTTTTACG AGCTGTTTTT TGACGATGCC
AAACAAGCAG CTGAGGCATT GAACATTGCG CTTACCTCTC GCGGCAAGTC AGAGGGAGAG
CCTATCCCCA TGGCAGGAAT CCCTGTCCAT GCGCGCCAAA CCTATTTAAA CAAGCTGATT
GAAGCCGGTT TTAAAGTTGC CATTTGTGAG CAGATGGAGC CACCGGGCGC CTCTAAAGGG
CCGGTACGCC GCGAGGTGGT GCGCACTGTC ACCCCTGGCA CCCTAACCGA AGAGAGCCTG
CTTAGCCCCC GCGAAAACAA CTATCTGGTC AGTTATCTCC CCGCAGCCAA GCGTCACCCC
CACGCTTTGG CTGCCCTGGA TCTTTCCACC GGTGAGTTTT TTGCTCTGAC CTTGGAAAGA
GAAGATCAAG TCGCCGCTGA GCTGTCCCGC CTAGAGCCCG CCGAACTGCT GATCCCCGAC
AACTGGGAGC CAGAGCCATG GCTCAAGGGG TGGAAACGCT GTCTGTCGCG TCGAGGTTCC
TGGTCTTTTG ATGGCAAAGA GGGGGCCCGG GTCCTTTTAG AACATTTTCA GGTCACCAGT
TTAGAAAGTT TTGGCGTGGC AGATAGTCCC CCCTGTTTAG GGGTGTGTGG TGCCCTCCTC
CACTATTGCC GCGAAACCCA AAAAGAGGCG CTTTCCCATA TCACTGGCTT GTCCCGCCTG
CATCAGCAAG AGGGCATGGT GCTGGATGAA ACCTGCCGTC GTAACCTAGA GCTTAACTAT
AACCTTAAGG ATGGCAGCCG CAAAAGCAGC CTGCTTGGGG TGATGGATCG CTGTATTACC
CCCATGGGTA GCCGTCTGCT GGCGCAGTGG ATCAACCGTC CATTGCAATC TCTGGACGCC
ATTGCCACCC GTCAAGAGAG CGTCTCCTGG TTGCGGGAAA ATTTGGTTGC TTACCAGGAT
CTGCGTGAAC GGCTGCGCAT GGTCCACGAT CTGGAACGCT TTTTAAGCCG TATTGCGCTA
CGCCGGGCCA GCCCTCGGGA TCTGGGAGGA CTCCGCCAAA CGCTGCAATG TCTGCCCCAG
CTCTACGCCA TCCTTACCCC AGCTGACGGG CACAGCCTCG CGGTACCCAG CCTACTACGC
ATCTTGGCCG ACCATTTTAA TGGCCACGAG GCGCTTACCA AGCAGCTTGA GCAGCAGTTG
GCCGATGAGC TACCGTTAAA CCTTAAAGAG GGAGAGACCA TTCGTCTGGG GTTTGATCAA
ACCTTAGACA CCCTGCGCAG CCTCAGCCGC GATGGCAAAA GCTATCTTAC CAAGCTGGAG
GTAGAAGAGC GGGAGAAAAC CGGCATCCCC TCGCTTAAAA TCAAATACCA TCGCAGCTTC
GGTTACAGCA TGGAGGTGAC AAAAACCCAT TTGGACAAGG TTCCCCCGCG CTATATCCAG
CGTCAGACCA TGACCAATGG TGTTCGTTAT GTCACCGAAG AGCTTAAAGA GTATGAAGAG
CAGCTGCTTA CCGCCGAAGA GCGCATGTTA GAGCGAGAGC AGCTTCTGTT TGAAGCACTG
GCCGAACAGG TTGCTCGCCA AGCCGAAACA CTGCAAGCCA GCGCCCGTGC CATTGCCACC
CTGGATGTCT TAGCCAATTT TGCGCACATT GCCGAGGAGC GCAACTATTG TCGCCCGCTG
TTGCATGAGG GGGCGGTGAT TGAAATTAAC CAGGGCCGGC ATCCGGTGGT TGAACAGTTT
TCCGACACCC CTTTTGTTGC CAACGATATA CGCTTGGATA ACCGCCAGCG TACCGGCTTG
ATTACCGGTC CCAATATGGC GGGTAAATCC ACCCTCATGC GTCAGGTTGC GCTCATTGTC
CTGCTGGCCC ACACCGGGGC GTGTGTACCG GCGGGTTCGG CTAAAATTGG GCGGGTGGAT
CGCATCTTCA CCCGTGTTGG GGCGTCGGAC GATCTGGCGG GGGGGCGCTC CACCTTTATG
GTGGAGATGA CCGAAACCGC CCACATTTTA CACCATGCCA GCGAGCGATC TTTGGTGATA
TTGGATGAAA TTGGCCGAGG CACATCCACC TACGATGGGC TCTCCATCGC CTGGGCGGTT
GCGGAACACA TCCACACCCA GTGCCAAGCC AGAACCCTAT TTGCCACCCA CTATCATGAG
CTTACTCAGT TGGAGTCGCA ATTGGATGGG GTGTTTAATC TCACGGTGGA GGTTAAGGAG
TGGAAAGATC AAATTCTCTT TTTGCACACC ATTGTGCGGG GAGCGGCGGA TCGTAGTTAT
GGTATTCATG TCGCCCAGTT GGCGGGACTA CCCCGTGCCG TCACCCGCCG TGCGCGGGAG
GTCTTGGCGG ATTTAGAGGA ACATGCCGTG CACCATCCAG ATTCCATGGG GCAAGGCCAC
GCCCCTGCCT CCCAGCCCTA TCAGCTCACG CTTTTTGAGG ATGCCCCACC CTCGCCAGCC
TTATTGGAAC TCAAGCGTGT CGATCCCGAC GAATTGACGC CCAAAGAGGC GTTGGAAGCC
CTTTATAGGC TCAAGGAGTT ATTGTAA
|
|---|
| Protein sequence | MSSPKQTPMI AQYLSIKAAH PETLLFFRMG DFYELFFDDA KQAAEALNIA LTSRGKSEGE
PIPMAGIPVH ARQTYLNKLI EAGFKVAICE QMEPPGASKG PVRREVVRTV TPGTLTEESL
LSPRENNYLV SYLPAAKRHP HALAALDLST GEFFALTLER EDQVAAELSR LEPAELLIPD
NWEPEPWLKG WKRCLSRRGS WSFDGKEGAR VLLEHFQVTS LESFGVADSP PCLGVCGALL
HYCRETQKEA LSHITGLSRL HQQEGMVLDE TCRRNLELNY NLKDGSRKSS LLGVMDRCIT
PMGSRLLAQW INRPLQSLDA IATRQESVSW LRENLVAYQD LRERLRMVHD LERFLSRIAL
RRASPRDLGG LRQTLQCLPQ LYAILTPADG HSLAVPSLLR ILADHFNGHE ALTKQLEQQL
ADELPLNLKE GETIRLGFDQ TLDTLRSLSR DGKSYLTKLE VEEREKTGIP SLKIKYHRSF
GYSMEVTKTH LDKVPPRYIQ RQTMTNGVRY VTEELKEYEE QLLTAEERML EREQLLFEAL
AEQVARQAET LQASARAIAT LDVLANFAHI AEERNYCRPL LHEGAVIEIN QGRHPVVEQF
SDTPFVANDI RLDNRQRTGL ITGPNMAGKS TLMRQVALIV LLAHTGACVP AGSAKIGRVD
RIFTRVGASD DLAGGRSTFM VEMTETAHIL HHASERSLVI LDEIGRGTST YDGLSIAWAV
AEHIHTQCQA RTLFATHYHE LTQLESQLDG VFNLTVEVKE WKDQILFLHT IVRGAADRSY
GIHVAQLAGL PRAVTRRARE VLADLEEHAV HHPDSMGQGH APASQPYQLT LFEDAPPSPA
LLELKRVDPD ELTPKEALEA LYRLKELL
|
|---|
| |