| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1394 |
|---|
| Symbol | |
|---|
| ID | 4481813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1694805 |
|---|
| End bp | 1695506 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639722137 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_865311 |
|---|
| Protein GI | 117924694 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCAT CAGCCCCCAT TCAGCTGCTT AACCCATTCG ATCCCCAGCG CCACTGGCCG
CTGGTTGAAA CGGTTTTGTT GGATATGGAC GGCACCCTTT TGGACCGCCA CTTTGACGAC
CATTTTTTTT TGGAGAGCGT GCCAAACCAT TATGCTCAAC AGAAAAATTT ACCCCTAGAT
CAAGCTCGTA CCGAGGTACT GCACGCCTAC CAGCAGGTGG AAAGCACCTT ATTATGGTAC
GATCTGGACT ATTGGAGCCG CACCCTGCAC ATGGACATCC CCCTGCTTAA ACGGGAGGTG
GCCCATTTAA TTGCCGTACA CCCCCACGTC TGCCCCTTTT TAGAGCGCGT GCGTGCCACG
GGCCGCCCCC TCTATCTGGT GACCAACGCC CACAGCGCCT CATTATCGTT AAAAATGCAG
CGCACCCCCA TTGGCCGTTA CTTTGACCGT ATTCTCTCCA GCCATGAGCT AGGTCTGCCC
AAAGAAGACC CCAATTTTTG GCCCCTTTTA CAACAACAAC TTGGGTTTAA CAAGGCATCG
ACCCTATTGG CAGAGGATTC TGAACCGGTG CTCCGGAGCG CAGCCCACTA CGGGATCGCC
TTTCCCTTGC ATATTGCTGC ACCCAGCTCA GTGCTGGCCC CGCAGTTTAG CACACAGTTT
AGCTCTTTTC GGGATTTCTC CCAACTGCTG CCACCCTGCT AG
|
|---|
| Protein sequence | MPASAPIQLL NPFDPQRHWP LVETVLLDMD GTLLDRHFDD HFFLESVPNH YAQQKNLPLD
QARTEVLHAY QQVESTLLWY DLDYWSRTLH MDIPLLKREV AHLIAVHPHV CPFLERVRAT
GRPLYLVTNA HSASLSLKMQ RTPIGRYFDR ILSSHELGLP KEDPNFWPLL QQQLGFNKAS
TLLAEDSEPV LRSAAHYGIA FPLHIAAPSS VLAPQFSTQF SSFRDFSQLL PPC
|
|---|
| |