| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1382 |
|---|
| Symbol | |
|---|
| ID | 4482477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1674219 |
|---|
| End bp | 1675910 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639722125 |
|---|
| Product | transposase, IS4 family protein |
|---|
| Protein accession | YP_865299 |
|---|
| Protein GI | 117924682 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5421] Transposase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0721927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATTG AACGTGTTCC CAATCGAAAT TCACACCCAA CCGTGCTGCT GCGGGAATCC
TACCGTGAAA ACGGTAAGGT CAAAAAGCGC ACCCTGGGTA ACTTGACTGG TCAACCCGAG
GAGACCATTG AGGCTTTGCG TGTGGTGCTC AAGGGTGGAC GCATGATGCC GATGACCTCA
GCCCTGACCA TTGAGGCCAG TCTGCCTCAT GGCCATGTCG CTGCTGTCGT CGGAGTGATA
AAATCCCTGG GCCTTAAAAG TTTGCTGGGA ACAAAACAAA CGCGCTACCG CAATTTAATC
CTGGCGCTGA TTGCCCAGAG AGTGCTTCAA CCTGCATCAA AACTGGCCTC GCACCGGCTG
TTCAACACGA CCACCTTGGG GCAGGAGTTC GGCGTGGCTG ACGCCAACAA GGAAGAACTT
TACAAAGCCC TCGATTGGCT CGGAGCGCAA CAGGAACGCA TGGAGAATCG CTTGGTGAAA
CAGCACCTTA AGGATGGCTC CATGGTACTG TTTGATCTCA CTTCCACCTA TCTGGAAGGA
AGACAGTGTG AACTGGCTGA GTACGGCTAC AGCCGCGACC ACCGCCCAGA CAAACTCCAG
ATTGAGATTG GCCTGCTGTG CGACAAGGAG GGTCGCCCTC TGGCCGTGGA GGTGTTTCCC
GGCAATACAG GCGATCCCAC TACGCTGACC GCCCAAGTGA ACAAGCTCAA GGCGCGCTTT
GGCCTCAAAC AGGTCATAGT TGTTGGTGAT CGGGGTATGA TCACCCAGGC CCGGATTGAC
GAAGATCTCC AACCTGCTGG TTTTTCATGG ATTACCGCCT TGCGCCACAG CACCATCCGA
TCACTGGCCA AAACAGACAA CTGGCCTTCT TTATTCGATG CGCGCAACTT TGCCGAGATC
ACCTCCCCAG ATTTCCCAGG TGAGCGACTG ATGGTCTGCC GCAATCCCTT CCTGGCCGAG
GATCAGGGGC GATCACGACG GGAACTGTTG ACCATCGCAG AACAGGGGTT GGAGACGATC
CTGCAAGCCG TGCAAGAGGG CTCTTTGCGT GATTGTGGTC AAATTGGCAA AAGGGCCGAC
CGGGTTCTGC GCAAGCTCAA AATCGCCCGT TATTTCAACT TGGAGATTGC TCCAGGGCGG
TTCGCTTGGT CCCGTAAGCA GGCTGTTATC GATCAGGAAA CAGCCCTGGA CGGAATCTAT
GTGGTCCGCA CCAACCTTCC CGAAAAGGAG ATCTCCAGTG CCGACACGAT CCGCCAATAC
AAATCATTGG CCCAGGTAGA GAGCGCCTTC AGACATTTGA AGAGCAGTCT GGATATCCGA
CCGATCTTTC ATTTCCGTGC CGATCGCATC AAAGCCCACG TCTTCCTGTG CATGTTGGCC
TACATGGTAG AACGGAAAAT GCGGATCAAG TTAAAAACGC TACTGTTCAC CGATGAAGCG
CCATTGCTCC CCGACGATCC TGTCATGCCC AGAGAGTCAT CGCCAAACGC CAAAGAGAAA
ACCGGCACAA GACGCTCTCC GGTAGGCCAT GCCTTGCAGA GTTTCAGCAC CCTGCTGGAG
CAATTGGCCA CCTTGACCCG TAATACTGTT CGTGCCCAAT GGGAGCCCGC GACTGGTAAA
CCGTTTGAGA TGCTTGCTAA CATCACCCCC CTACAGCAGG AGGCCTTCCG GCTACTCAGC
ACCTCGCCTT AA
|
|---|
| Protein sequence | MHIERVPNRN SHPTVLLRES YRENGKVKKR TLGNLTGQPE ETIEALRVVL KGGRMMPMTS
ALTIEASLPH GHVAAVVGVI KSLGLKSLLG TKQTRYRNLI LALIAQRVLQ PASKLASHRL
FNTTTLGQEF GVADANKEEL YKALDWLGAQ QERMENRLVK QHLKDGSMVL FDLTSTYLEG
RQCELAEYGY SRDHRPDKLQ IEIGLLCDKE GRPLAVEVFP GNTGDPTTLT AQVNKLKARF
GLKQVIVVGD RGMITQARID EDLQPAGFSW ITALRHSTIR SLAKTDNWPS LFDARNFAEI
TSPDFPGERL MVCRNPFLAE DQGRSRRELL TIAEQGLETI LQAVQEGSLR DCGQIGKRAD
RVLRKLKIAR YFNLEIAPGR FAWSRKQAVI DQETALDGIY VVRTNLPEKE ISSADTIRQY
KSLAQVESAF RHLKSSLDIR PIFHFRADRI KAHVFLCMLA YMVERKMRIK LKTLLFTDEA
PLLPDDPVMP RESSPNAKEK TGTRRSPVGH ALQSFSTLLE QLATLTRNTV RAQWEPATGK
PFEMLANITP LQQEAFRLLS TSP
|
|---|
| |