| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1363 |
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| Symbol | |
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| ID | 4481835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1658814 |
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| End bp | 1659992 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639722106 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_865280 |
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| Protein GI | 117924663 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCAGCA AACCGCACCA GATCATCGGC AACAGCACCG CTCTGAAAGC GACCTTGGCA
AAAGCCAAGA AGGTCGCCAA GACGGTGCTG CCCGTGCTGA TCACCGGTGA GAGCGGTACT
GGCAAGGAGC TGTTTGCCCA ATTCATCCAT GACCAGAGCC GCCGAGCCCA GAAACCGTTC
GTCGCCGTCA ATTGCGCCGC CATACCTGCG GAATTGCTGG AAGCGGAGCT GTTTGGGTAC
AAGAAAGGCG CGTTCAGTGG GGCAACCAGC GACAAAGACG GCCTGTTTGT CCAGGCCAGC
ACCGGAACCC TGTTTCTGGA TGAAATCGGG GACATGCCAC TGCCACTCCA GGCAAAGATC
CTTCGGGTGT TGCAGGAAGG AGAAGTCCGG CCCGTCGGCG CAAAGGCCGT GCAGAAGGTG
GATGTTCGGA TCCTTTCCGC CACGCACCGC GATCTTGCCG AGATGGCGGA AGAAAGAAAA
TTCCGGGAGG ATTTGATCTT CCGACTCAAG GGATATGCGA TCCAGTTGCC CGCACTCAGA
GAGCGTGGGC ATGACATCGT CAAGCTGGCC CGGGCGTTCC TGAAATCCCG AGAGGATTTC
ACCGGGACCG GTTTGAGCCG GGATGCCCAG ACGCTCCTGA TGGCCTATCA TTGGCCGGGC
AATGTGCGGG AGCTGCAGAA CATCATCCTG GCCGCAGCGG TGGATGCCCG TAGGAATATT
TTTGCAGAGC ACCTGGTTGG CCACCTTCCG GACACCGTTG GCGTTGAAGA CCCGAACAAG
TCAGTGAAGG AGCGGATCAC ATCGGCGCTC CAGCAAGCCG GCAGTTTGGC CCTGGTCGAC
CTGCAGAGCA GGCTGAAGAT TCCCAAGCCC ACAATTCACC GACACCTGAG CCGCATGGTG
GCTGAGGGAG ATGTGTCGCG ATCTGTTGTC TCTGGCCAGA CGATCTTCGC CTTGGCAGCA
CCCGACTCAG AAGATGAGAT GCCGCAGCTC ACCCAGCGCC AGGAGCAGGC CGTTGCTCTC
ACGCGAGCGC TTGGCCGAAT CACCCGACAG GAGTTGGCAA CTGAGCTGGG AATCTCCATC
CGAACGGCGA GTCGTGAATT GTCGGCATTA GTGACCATGG GTGCTCTGGG CCCTGACGGT
CAGTCCGGTC GCATGGCCGG CTACCGCTGC TTATTTTAG
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| Protein sequence | MSSKPHQIIG NSTALKATLA KAKKVAKTVL PVLITGESGT GKELFAQFIH DQSRRAQKPF
VAVNCAAIPA ELLEAELFGY KKGAFSGATS DKDGLFVQAS TGTLFLDEIG DMPLPLQAKI
LRVLQEGEVR PVGAKAVQKV DVRILSATHR DLAEMAEERK FREDLIFRLK GYAIQLPALR
ERGHDIVKLA RAFLKSREDF TGTGLSRDAQ TLLMAYHWPG NVRELQNIIL AAAVDARRNI
FAEHLVGHLP DTVGVEDPNK SVKERITSAL QQAGSLALVD LQSRLKIPKP TIHRHLSRMV
AEGDVSRSVV SGQTIFALAA PDSEDEMPQL TQRQEQAVAL TRALGRITRQ ELATELGISI
RTASRELSAL VTMGALGPDG QSGRMAGYRC LF
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