| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1338 |
|---|
| Symbol | |
|---|
| ID | 4480745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1621478 |
|---|
| End bp | 1625029 |
|---|
| Gene Length | 3552 bp |
|---|
| Protein Length | 1183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639722081 |
|---|
| Product | TP901 family phage tail tape measure protein |
|---|
| Protein accession | YP_865255 |
|---|
| Protein GI | 117924638 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.413563 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGAA CCACGGCGGC GCTTGAGTTT GTCATTAGGG CAAATGACGA TGAACTGCGT
TCTGCTGTCA CCCGCATGCA GAGCGACTTT CGCCAGGGCG TGCAATCCAT GGCCTCCGCT
GCTCAGACTC AGGCGCAGCG TATCAATGGG GCACTATCGG ACATCGATGC TTTCCGCAAT
CTAAAGCGAC AAATCAGGGA GAGTGAAGAT CAATGGCAGG CGGCCACCCG TGAGGTGGCC
CATCTCGCGG TGCAGATGCG GGAGACCGAA ACACCCACCC GCGCCATGAC CCGCGCCTTT
GAGCAGGCCA AGCGCAATGC CCGTTCTCTG AAGGATCAGG TAGAGGCTCA GCGGGAATCC
CTTCATGGCC TGCGGGGTAA CCTGCGTCAG GCCGGGATCG ATACGACCCG CCTCAGTGAA
AGCCAGGAGC GGCTCCAGCG GGATCTGCGC GCCTCTACCC GTGAGGTGCA GGCTCAAAGT
CGCGTGAACC GTGCCTTTGC CACCATCGGC GTCCGATCCA TGCGCGAGGT AGAGGACGAA
GTCCAGAGGC TAGAGAATGC CTATCGGGAA CTGGCCCGCT CCGGTCGGGT TTCTGCGGCG
GATCTCAACC GTGCTCATCA GCAGATGCAG AGCCGGGTGC GTACCCTGCG TGGTGAAATG
CAGGGCTTAA ACGGTGCCAT GACCGGAATG GCGGGTACTG TGCGCAATCT GGCAGCAGCG
TATGCCGGGT TTGAATCCAT TCGTGCGGCA TCCAACTTTA TCAAAGACTC CATCCTTACC
TATGCCGCCT TTGACGACAC CATGAGGCAG GTGGCGGCTA CATCTGGCGC GACATCAGAA
GAGCTGACCC AACTGACCGA GTTGGCCAAG GAGATGGGAG CCTCTACCCG ATTCAGCGCC
ACTCAGGCAG CGGGTGGTCT CAAAGCCATG TCCCTGGCGG GGCTCTCGGC ATCCCAACAG
CTGCAAGCCC TACCAAAAGT TCTGGAGTTG GCTGCAGCCG GTTCGGTGAA TCTGGAAACC
GCAGCAGGCA TCGCCACCGC CTCTATGGCC CAGTTTGGGT TGCAGGCCCG TGATCTGGGC
AATGTAAACG ACATCCTGGT CACCGCCTTC ACCAACTCCG CCACCAACAT TCAGGATCTA
GGTCTTGCTC TACAGTACGC AGGACCTGTG GCGAAGGCCG CTGGAAACAG CTTTGAAGAG
ACCGCCACCG TGCTGGCCTT GCTGGCCAAG AACGGCTTCT CTGGGGAAAA AGCGGGTACC
GCGCTGCGTA GCGCCTATGC CCGTCTGCTG GCCCCGGTGG ATAAAGCCCA AGAGGCCATC
AACCGTATGG GCCTTCAGAC CCGTGATGCC ACTGGCCAAC TGCTGCCCAT GACGCAAGTG
CTGCGCAACC TGAGGGCAAG CGGGGCCGAT GCCGCCGACA TGATCCAGAT CTTTGGGGTG
GAAGCTGCGC CTGCGTTAAC CGCTGCCGTA GGCATGTCCT CCCAGGCCTT TGAGGCGTTG
GTATCCAAGT TTGAACAGGT GGGCGGTGTC GCCGGGCGTG TGGCCACAGA GATGGAAGCG
GGCATGGGCG GATCCATCCG TTCCCTGGAG TCCGCCTGGG AGGGGGTGAA GATTGCGGTT
GGTGAGGCCA TCGACAAGCA CAGCAGCCTT AATTTTCAAG AGCTCACCGC CGCCATCAAT
GAAAACAAGG ATGCCATCGT CGAGTTGGCT CTGGCTGGTG TGGATCTGGC TGCCATGTTG
GGCCGTGTGG CTCTGATGGT GGGTGAGTTC ATCCTGGCGT GGAAAGAGGT CATCGGCGTG
CTGGGTGGGG CGTATCTGGC CATCAAAACC CTGCGTGTGG CCATGGCAGC ACTCACAGCA
CTTCAGACCG CTCAGTGGTT TCTAACCGTT ACCCGTGCTG CCTCTGGCTT GGTAGCCGTG
GTAGGCGCTC AGGGATTGGT TGGCGCATTG GCGCTGGTCC GCACCCGTCT GCTTTCTCTT
ATCTCAATCA ATCTGGCCGG GTTCTTTATC CGGGGTGCTG CCGCTGTTGG AAGCCTGCTC
GCCGTGCTCA CAGGCCCTGT TGGGCTTATA GCTGGGGCGA CGGCGGCTGT GGGCGCACTA
GGCTACATGG CTTACTCCTG GTTGAAAACC AAGGATGCCC AGGATGAGGC GGCGGAATCC
GGCAAGGCAG CGGTTGAGAC CCAAGAGCAG TTGGCTGCCC GCCTGAAGCA GACCGGGCAG
CAACTGGGGA TCAACATTCC CGACCTGGAG ACCTTCAACC GTCTACAGCG GGAAGGCACC
ATCATTGCCG ACAAAAGCAC CGGGGGTTGG CGACTGGCCG CAAAGGCCGC TTCCGATGCC
ATTCAGACTC AACGTCGCGC GGCCCAAGAA GCCGCCAACC AGCTTTCAAA TCTTACCCGC
CAGCGGACAT CTGCCCAGCG CAAACTGGCG GATCTTGAAC GACAACTGGC CGAAGAGCAG
AAGCGCCAGG CCCGTGAGGT ACTCACCGAG AAGATCCGTA CTGCTGAACA GTCCGTTCAG
GCCACGGAAC GCGCCCTGCA ACAGAGCCTG ACTGCCGAGA AACGACTGGC CGATCAGATC
CAGGGCATCG AAGAGAAAAA GCGCAACGCC CGTATCTCCA CCGAGGATAA GGTGCGCTCG
CTGTTGGAAC GCAACATGTC CGACCGGGAG AAAGAGACCT CCCGCGCCGC CGCAGCCTCC
CAAAAGTTGG CTGAGGCCCA ACAGCTGCTC TCAAAAACAA CCCTTTCCGA GCAGGACATC
AAGTGGGCCG AATCCCTGGC CCGAGGGGCT CAGGATGCCT TCTCCAGTTT GAATGATACC
TCCACCGCCA TCCGGGGTGT GCAGGACGCC GGGGATGTAC TGGATCAACT CTATCAGCGC
CAGGAAGAGA GTGCACGAAA GGCGCTCTCT ACCCAGAAAG ATCAGACCAC ATCTCTTACC
GAGCAGTTGG AAACAGCACG TGGCCAGGTG GATCTGCTCA AACAGGCTAT GGAAGCCCTT
CCTGACCGGG TCACCAAATC AGTCGAGCTT CAGGCTCAGG TTGAGCAAGC CCAGTCCGCA
CTCTCAGCCA TCGAAAAGCA GATGGCGGCA CTGAAGGATA AAACCGTCAC CATCACCATG
AAAACCATCG AGGCCAAGCA GTCGGGAGGT ATGATCGGTC TAAATCGTGG TGGTCGTCTT
CCCGGCTATG GGGGTGGTGA CCGCATCCAT GCCTTGCTTG AAGCCGGTGA GATCGTGATC
CGCAAAGAGC GCTCCAGGAT CTTCAAGGAT CTGCTGCTGA CCATCAACTC CGCGCCCATG
GAGACCGTGA AGCGTATCCT GCCCAACCTG CCCAGGTTTC AAACCGGGGG GATGGTGGGG
TTGCCGGAGA TCCCAGCGCT TCCTCAGCTT TCCTTTGCAG GGGCCGGTGG TTCTGGACAG
CCCCCAGTAG AGGGGATCGT TCAGCTTGAT CTGACCATGA ACGGCAGGCC AGCGGCCTCC
ATCACCAGCC CCCGGCAGCA GGTGCGGCAA CTGGTAGATG CCCTCAAGGA ATTACAGCGC
GGTACCTTCT GA
|
|---|
| Protein sequence | MARTTAALEF VIRANDDELR SAVTRMQSDF RQGVQSMASA AQTQAQRING ALSDIDAFRN
LKRQIRESED QWQAATREVA HLAVQMRETE TPTRAMTRAF EQAKRNARSL KDQVEAQRES
LHGLRGNLRQ AGIDTTRLSE SQERLQRDLR ASTREVQAQS RVNRAFATIG VRSMREVEDE
VQRLENAYRE LARSGRVSAA DLNRAHQQMQ SRVRTLRGEM QGLNGAMTGM AGTVRNLAAA
YAGFESIRAA SNFIKDSILT YAAFDDTMRQ VAATSGATSE ELTQLTELAK EMGASTRFSA
TQAAGGLKAM SLAGLSASQQ LQALPKVLEL AAAGSVNLET AAGIATASMA QFGLQARDLG
NVNDILVTAF TNSATNIQDL GLALQYAGPV AKAAGNSFEE TATVLALLAK NGFSGEKAGT
ALRSAYARLL APVDKAQEAI NRMGLQTRDA TGQLLPMTQV LRNLRASGAD AADMIQIFGV
EAAPALTAAV GMSSQAFEAL VSKFEQVGGV AGRVATEMEA GMGGSIRSLE SAWEGVKIAV
GEAIDKHSSL NFQELTAAIN ENKDAIVELA LAGVDLAAML GRVALMVGEF ILAWKEVIGV
LGGAYLAIKT LRVAMAALTA LQTAQWFLTV TRAASGLVAV VGAQGLVGAL ALVRTRLLSL
ISINLAGFFI RGAAAVGSLL AVLTGPVGLI AGATAAVGAL GYMAYSWLKT KDAQDEAAES
GKAAVETQEQ LAARLKQTGQ QLGINIPDLE TFNRLQREGT IIADKSTGGW RLAAKAASDA
IQTQRRAAQE AANQLSNLTR QRTSAQRKLA DLERQLAEEQ KRQAREVLTE KIRTAEQSVQ
ATERALQQSL TAEKRLADQI QGIEEKKRNA RISTEDKVRS LLERNMSDRE KETSRAAAAS
QKLAEAQQLL SKTTLSEQDI KWAESLARGA QDAFSSLNDT STAIRGVQDA GDVLDQLYQR
QEESARKALS TQKDQTTSLT EQLETARGQV DLLKQAMEAL PDRVTKSVEL QAQVEQAQSA
LSAIEKQMAA LKDKTVTITM KTIEAKQSGG MIGLNRGGRL PGYGGGDRIH ALLEAGEIVI
RKERSRIFKD LLLTINSAPM ETVKRILPNL PRFQTGGMVG LPEIPALPQL SFAGAGGSGQ
PPVEGIVQLD LTMNGRPAAS ITSPRQQVRQ LVDALKELQR GTF
|
|---|
| |