| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1290 |
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| Symbol | |
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| ID | 4480603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1583598 |
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| End bp | 1584827 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639722033 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_865207 |
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| Protein GI | 117924590 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.223029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.133177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCAGCA AACAGCACCA GATCATCGGC AGCAGCGCCG CCCTGAAGGA GACCTTGGCC
AAAGCCAAGA AGGTCGCCAA GACGGTGCTG CCCGTGCTGA TCACCGGTGA GAGTGGTACC
GGCAAGGAGC TGTTTGCCCA ATTCATCCAT GACCAGAGCC GCAGAGCTCA GAAACCGTTC
GTGGCCGTCA ATTGCGCCGC CATCCCAGCG GAATTGCTGG AAGCGGAGCT GTTTGGGTAC
AAGAAAGGCG CTTTCAGCGG GGCAGTCAGC GACAAGGATG GTCTATTTGT TCAAGCACAT
GGAGGGACTC TTTTACTTGA TGAAATCGGG GATATGCCTC TTCAACTTCA AGCCAAGATA
CTTCGTGTGC TCCAGGAAGG AGAAGTCCGG CCCGTCGGCG CAAAGGCCGT GCAGAAGGTG
GATGTCCGGA TTATTTCAGC CACCCACCGT GACTTGACGG AGATGGCTGT GGAGAAAAAA
TTCAGGGAAG ATTTGGTCTT TCGCCTCAAA GGATATGCGA TCAATCTTCC TTCACTTAGG
GATCGCGGAC ATGACATCGT CAAACTTGCT CGGGCATTCC TCAAATCCAG AGATGATTTT
ACCAGCACGG GATTGAGCAG GGATGCCCAA ACGCTCCTAA TGCACTATCA TTGGCCTGGG
AATATTCGGG AGCTGCAGAA TGTCATCCTG GCAGCCGCAG TGGATGCAAC CAGGAACATT
GGCGCTGAGC ATCTGGTTGA ACACCTGCCG GATGCCATCG ACGTCGAAGA TCCAAGCATG
TCAGTGAGGG AGCGGATCAC ATCAGCGCTC CAGGAATCGG GCAGTTTGGC CTTGGTCGAG
CTGCAGAGCA GGCTGAAGAC CCCCAAGGCC ACGATTCACC GGCACCTGAG CGGCATGGTA
GCTGAGGGAG ACGTGACGCG GTCTATGGTT TCCGGTCAGC CGATTTTCGC TTTGGCAGAA
TCCCAATGTG GGGGTGCTGA ACTCCAGCTC ACGCAGCGCC AGGAGCAGGC CGTTGCTCTC
ACGCGAGCGC ATGGCCGGAT CACCCGGCAG GAGTTGGCTG AGGCGCTGGG AATCTCCATC
CGAACCTCAA GCCGTGAAAT TTCAGCGTTG GTGGCCGTTG GGGCGCTGAC TCCTGATGGC
CAAGTTGGCC GCATGGCTGG TTATCATGTG GGAAATCAGA CCAATCTGCC TCACTCTATG
GCGCACCAGC ACACAAACCA CGGCAGATAA
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| Protein sequence | MSSKQHQIIG SSAALKETLA KAKKVAKTVL PVLITGESGT GKELFAQFIH DQSRRAQKPF
VAVNCAAIPA ELLEAELFGY KKGAFSGAVS DKDGLFVQAH GGTLLLDEIG DMPLQLQAKI
LRVLQEGEVR PVGAKAVQKV DVRIISATHR DLTEMAVEKK FREDLVFRLK GYAINLPSLR
DRGHDIVKLA RAFLKSRDDF TSTGLSRDAQ TLLMHYHWPG NIRELQNVIL AAAVDATRNI
GAEHLVEHLP DAIDVEDPSM SVRERITSAL QESGSLALVE LQSRLKTPKA TIHRHLSGMV
AEGDVTRSMV SGQPIFALAE SQCGGAELQL TQRQEQAVAL TRAHGRITRQ ELAEALGISI
RTSSREISAL VAVGALTPDG QVGRMAGYHV GNQTNLPHSM AHQHTNHGR
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