Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1239 |
Symbol | |
ID | 4484119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1538953 |
End bp | 1541091 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639721982 |
Product | TOPRIM domain-containing protein |
Protein accession | YP_865156 |
Protein GI | 117924539 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0951779 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAATG GGGCTCCATA TCTCGATTTC AATGATGCCG GTGGGCAGCA GGAGTTTTCC TCTGTTGCAG AACAGCATCA TGAAAAGGAG GAGATCAAGG CACGTCTGCA GAGCCAGATT GAGTCGGTGC TGTATCACCT TCTGCCTGCC GGGAAGGTTC GTCATGGGCA GTTCTTCATC GGCGATGTGG AGGGCAACCC CGGTGAAAGT ATGAAGGTAG AACTGACCGG CGAAAAGGCT GGGGTCTGGT ACGACCATGC CGCAGGTTCG GGTGGCGACA TCCTGGACCT GTGGGCCCGG TCACGAGGCA TGGACACCCG CACCCAGTTC CGTGACGTCA TGGATGATGT GCGCGGCTGG CTGGGAGAGT CCGTGAGATT ACCACCTGTT TCGATGCAAC CAACTCAACG GCGTGAACCC CCCATGGATG AGCTGGGGCC CCATACCGGT AAGTGGGACT ATTTCGATAC CAATGGCCAA CTACTGGTCT GTGTCTACCG TTACGATCCT CCGGGCCGCC GAAAGCAGTT CCGCCCTCTG GATGTGCGCA CCGGCAAGTG GCAGTCGCCA GCGGTGACGC CCCTCTACAA CCTCCCCGGC ATCATTCACG CCGCTGAGGT GGTGCTGGTC GAAGGGGAAA AGAGCGCCCA GGCGCTCATC GATGCGGGAA TCCCGGCCAC CACCTCCATG GGCTCCAAGG GACAGATCAA CCGTGCCGAT TGGAGTGTTC TCCAGGGAAA GCGGGTAATC ATCTGGCCCG ACCGGGACAA GGCAGGATGG GAGTACGCCC AATTGGCTTC ACAGGCCGCC AGAAACGCGG GTGTTCGGGA AGTATCCATT CTCACTCCAC CGGAGGAGAA ACCTGAAAAA TGGGATGCCG CTGATGCCAT GGCTGAAGGG ATGGATGTGC GTGCTTTCAT CCATGGAACA CCACGTCAGG AACCACAGAC CCGGAAACGC CGCATCCGAC TGATGGATTG GACCTTCGAC CGTTATGACG GCCCACCCCC GCCACGGGAG TGGTTGGTTG AGGGTGTTCT TCCCCTCGGA GTGCCCGGCA TGGTCGCCGC CATCGGTGGA GCAGGAAAAA GCATGCTGTT GTTGGACCTT TGCATCAAGG TGGCTCAGAT ACATACAGGG AATCCCATTC CCACAGAGGC GCTGGGAGGT CCTTTGGTCC CTATTGAAGG TACAGCGGTC ATGCTCACCG CTGAGGACGA TCAAGATGAG ATCCACAGAC GACTCAATCT GCTTGTTGGA GATCTTCCAG ATCCCAGAAG GCTGATTGTG ATTCCACTGC CCAATGCAGG TGGTGCTATG CCCCTTGTCG CCATGGGTCG TGAAGGCCCT GTACTCACTG ATGCCTACGA GGAGATGCGT CAGGAGCTAT TGGAAATCCC AGACCTGCGA TTAGTGGTCA TCGATCCACT CCAAAGCTTT GCAGGTGGAG ATGTCAATAG TGACCCCGCC GCAGGGTCCA TGTTCTTTGC TGGGTTGGGC CGCATTGCTG CTGAAACAGG GGCAACCACA TTAGTAGCGC ACCATTTCAA GAAAGTGGGT AGCAAACCCA TTCACAGCGC CAGTGAAGCC AGAGAAGCCA TCCGTGGCAC CACTGCCCTA GTTGACGGTG GGCGCTGGTC TTACGCCCTA TGGGAAGCCT CACAGGATGA ATCCATCAAA ATCTGTACCC AACTGCAACG CAGTTATGAA CGTGACTCTG TGTTCAATGG TGCGGTGGTC AAAAGCAACT GGCCAGTTGA TAAAGCAGTT AGGGTCTATG TTCGCGAGTC ATCGACAGGG TTACTACAAG ATCGTTCAGT TGACCTCGCT ATGCGCATCA GTGGCAATGA AGATTTAAGT AAAAGTCTTG TCATGGCTCT GGGTAAAGCA GCATCCAATG GCCAACCATT CACGAAAACT GGCGGTAATG GTGTCTTTGA ACGTAGATCA GAGCTTCCAG GCGACTTACA GGCGTTTTCC AAGCATAAGA TAGCAGAGTT GATTGACTCC TTATTGCGAA CAGGACGGCT AGTGCAGTGC GTAGCACCGG GTAGTCATAT CAAAAAATGG CTCGATGTTC CGGGGGGTGA GTTTGCACTT GGCGTCGGTG AATTTCAGCT GGGATCTGGA GCTGAATGA
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Protein sequence | MNNGAPYLDF NDAGGQQEFS SVAEQHHEKE EIKARLQSQI ESVLYHLLPA GKVRHGQFFI GDVEGNPGES MKVELTGEKA GVWYDHAAGS GGDILDLWAR SRGMDTRTQF RDVMDDVRGW LGESVRLPPV SMQPTQRREP PMDELGPHTG KWDYFDTNGQ LLVCVYRYDP PGRRKQFRPL DVRTGKWQSP AVTPLYNLPG IIHAAEVVLV EGEKSAQALI DAGIPATTSM GSKGQINRAD WSVLQGKRVI IWPDRDKAGW EYAQLASQAA RNAGVREVSI LTPPEEKPEK WDAADAMAEG MDVRAFIHGT PRQEPQTRKR RIRLMDWTFD RYDGPPPPRE WLVEGVLPLG VPGMVAAIGG AGKSMLLLDL CIKVAQIHTG NPIPTEALGG PLVPIEGTAV MLTAEDDQDE IHRRLNLLVG DLPDPRRLIV IPLPNAGGAM PLVAMGREGP VLTDAYEEMR QELLEIPDLR LVVIDPLQSF AGGDVNSDPA AGSMFFAGLG RIAAETGATT LVAHHFKKVG SKPIHSASEA REAIRGTTAL VDGGRWSYAL WEASQDESIK ICTQLQRSYE RDSVFNGAVV KSNWPVDKAV RVYVRESSTG LLQDRSVDLA MRISGNEDLS KSLVMALGKA ASNGQPFTKT GGNGVFERRS ELPGDLQAFS KHKIAELIDS LLRTGRLVQC VAPGSHIKKW LDVPGGEFAL GVGEFQLGSG AE
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