| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1204 |
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| Symbol | |
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| ID | 4481197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1500214 |
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| End bp | 1501866 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639721947 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_865121 |
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| Protein GI | 117924504 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.132443 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00777378 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGCAG ATCTCTACAG TCCTTTCCGT GCCAACCCCA GTGCCATCAT GCAACTGACG
CGTTCAGCGT TGATTGCTTC TCAGTTAGAG GCACTTTACC AAGTGGGGCG TATTTTGGCT
GAAGAGGGCA ACCTAACCGC TGTGTTGGAT GGCGTGTTGG AGGCCGTGGA GAAAATGGGT
GGGATGAGCA AAAGCATCAT CACCCTGTCG GACCCGGAAA CGGGCCGTCT ATTGGTACGC
GCAGTACACG ACAGCAATGA GGGGTTTGCC CCCCTGGGTG GGGACGATAT CGTCTACCGT
CCCGGCGAAG GGGTGATGGG CTCCATCATG CAGAACGGCA ATACCTTTAT TTGCGAACTG
CCTGCCAATG AGCAGCGCTT TCTGCATCGT TTGGGATTGC TGGACCCTAC GTTGCCTTTT
ATTGGTGTGC CCCTGTTTTT GGACGCCAAA CCCATTGGTG TTTTGGCGGC CCAGCCTGTG
TTCGGCAACC GTGCCTTTTT GCGGGAACAG GCGCACTTTT TGGAGATGGT GGCCAATTTG
GTATCGCAAA AAGTGCGTTC CAACCAGCGT TATGAGCAGT TGCAAGCCCT GTTAAGCAGC
CAGGCTGTGG GGCGCTCAAC CACCGCAATG AGCACGGCGA TCCGTATTGA GAACGAGCGC
TCTGGCATGC AGCCGGTGTT GTTGGGCAAA GCGGCCTCCA TGAAACAGGT TGTGAACATG
GCCCTTAAAG CGGCTCAATT TGATAGCACC GTGTTGGTGC TAGGGGAGTC GGGTACAGGT
AAAGAGTTGG TGGCCAATAC GGTACACTAT AATAGTGCTC GGGCCAGTCG GCCCTTTGTT
AAAGTCAACT GTGCTTCGTT ATCGGATAAC TTGCTAGAGT CTGAACTGTT TGGCCATGAA
AAAGGGGCAT TTACCGGTGC CATTGCAACC CGTAAAGGGC GTTTTGAAAT GGCCGATGGC
GGCACCCTGT TTCTGGATGA GATTGGTGAA ATTTCCCCCT CGTTCCAAGC CAAGTTGCTG
CGGGTGTTGC AAGAGGGTGA GTTTGAACGG GTAGGGGGTG CGCGCACCAT CAAGGTCAAT
GTGCGGGTGG TAGCGGCCAC CAACCGTGAC CTCAGCGCCG AGGTGCAAAA GGGTAACTTC
CGCGCGGACC TCTTCTACCG TCTGCATGTG CTGCCCATTG AGATACCTGC CCTGCGGGAG
CGTATGGAAG ATTTGCCCTT GCTGACCGAA GCGCTGCTAG AGCGCATCTC CACCAAGCAG
CACCGCCCCT TGAGCATCAC CAAAGAGGCT CTGCGCCGTT TGATGATGTA TGAGTGGGCC
GGTAATGTGC GCGAACTGGA AAATTGCCTG GAGCGTGCCG CCGTGCTGAG TGATGAGGGG
CACATTGACG CCTCGCACAT TATCTTCTCT AGCGGGGCCA ATCGGGAGCC GATGCCTGCA
TTGACCAACC ACCGTATCCA CAATGCCAGC AGTTGCGCCC TGCCCAGCAG TGCCGATTTA
AGCGATCCTA CCTTGGAGGA GCGTGAGCGG GTGATGGGGG CCTTGGAGCA GTCAGGCTGG
GTGCAGGCAA AAGCGGCCCG TCTCTTGGGC ATGACCCCCC GTCAGGTGGC CTACCGCATT
AAGATACTGA ACATCCCCAT GCGCACATTA TAA
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| Protein sequence | MSADLYSPFR ANPSAIMQLT RSALIASQLE ALYQVGRILA EEGNLTAVLD GVLEAVEKMG
GMSKSIITLS DPETGRLLVR AVHDSNEGFA PLGGDDIVYR PGEGVMGSIM QNGNTFICEL
PANEQRFLHR LGLLDPTLPF IGVPLFLDAK PIGVLAAQPV FGNRAFLREQ AHFLEMVANL
VSQKVRSNQR YEQLQALLSS QAVGRSTTAM STAIRIENER SGMQPVLLGK AASMKQVVNM
ALKAAQFDST VLVLGESGTG KELVANTVHY NSARASRPFV KVNCASLSDN LLESELFGHE
KGAFTGAIAT RKGRFEMADG GTLFLDEIGE ISPSFQAKLL RVLQEGEFER VGGARTIKVN
VRVVAATNRD LSAEVQKGNF RADLFYRLHV LPIEIPALRE RMEDLPLLTE ALLERISTKQ
HRPLSITKEA LRRLMMYEWA GNVRELENCL ERAAVLSDEG HIDASHIIFS SGANREPMPA
LTNHRIHNAS SCALPSSADL SDPTLEERER VMGALEQSGW VQAKAARLLG MTPRQVAYRI
KILNIPMRTL
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