| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1170 |
|---|
| Symbol | |
|---|
| ID | 4482432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1470656 |
|---|
| End bp | 1471717 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639721913 |
|---|
| Product | poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit |
|---|
| Protein accession | YP_865087 |
|---|
| Protein GI | 117924470 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
|---|
| TIGRFAM ID | [TIGR01836] poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.120374 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCCCC TTCAACTTAC CCCCCAATCC ATTGCCCAGG AGTTGGCCGA TTTTAATAAG
AACTTGGCCG AGGGCTACAA AAATTTGGCC GAGTTAGGCC CCATTGAGGT TGGTACCAGC
GATAAAGAGG TGGTCTACCG CGAAGATAAG ATGGTGCTTT ACCGCTTTAC CCCCCAGGTA
AAAAAGCCCC ATGCGGTGCC CATGTTGATT GTCTATGCGC TGGTGAACCG CCCCTATATG
ACCGATCTGC AAGAGGATCG CTCCACCATC CGGGGTTTGC TGGAAGAGGG CATGGATGTC
TACCTGATTG ATTGGGGCTA CCCCGATGCG GCTGACCGCT ATCTGGGGTT GGAAGATTAT
GTCGATGGGT ACATAAAACG TTCGGTCAAC CATATCTGCC GCAGCCATGA TCTGGATGCC
ATCAACCTGT TGGGCATTTG TCAGGGTGGG GCGTTTAGCC TCTGCTTTGC GGCGCTCTAC
CCGGAGAAGG TGAAAAATTT GGTCACGATG GTGACCCCGG TGGATTTTCA AACCCCAGAC
AACATGTTGT CCCTGTGGGC GCGCCATCTG GATGTAGATC TGCTGGTGGA AACCATGGGC
AATGTGCCCG GTGAACTGCT TAACTTTACC TTTCTCTCCA TGAAGCCATT CTCTTTAACC
GGTCAAAAGT ATCTGGATCT GGTTGAGATT ATGCAGGACA AAACCAAGCT GTGTAATTTT
ATGCGCATGG AGAAGTGGAT CTTTGATAGC CCGGATCAAG CGGGGGAGGC GTTCCGTCAG
TTTATCAAGA TGTTTTATCA GGAGAACGGC TTGGTCAACG GTACGGCGCA GATTGGTGGT
AAGGAGGTTA AGCTGGAAAA CATTACCATG CCGATCCTTA ATATTTACGC CACCCTTGAC
CATTTGGTGC CCCCGGCGGC CTCCAAGGTG TTAAAGGGTC TGGTGGGGTC GACGGACTAC
ACCGAGCTCC CTTTTAAGGG GGGGCATATT GGTATTTATG TATCCGGTCG GGCGCAGCGT
GAAGTGCCCC CGTCCATAGC AAACTGGTTA AAGGCACGCT AA
|
|---|
| Protein sequence | MFPLQLTPQS IAQELADFNK NLAEGYKNLA ELGPIEVGTS DKEVVYREDK MVLYRFTPQV
KKPHAVPMLI VYALVNRPYM TDLQEDRSTI RGLLEEGMDV YLIDWGYPDA ADRYLGLEDY
VDGYIKRSVN HICRSHDLDA INLLGICQGG AFSLCFAALY PEKVKNLVTM VTPVDFQTPD
NMLSLWARHL DVDLLVETMG NVPGELLNFT FLSMKPFSLT GQKYLDLVEI MQDKTKLCNF
MRMEKWIFDS PDQAGEAFRQ FIKMFYQENG LVNGTAQIGG KEVKLENITM PILNIYATLD
HLVPPAASKV LKGLVGSTDY TELPFKGGHI GIYVSGRAQR EVPPSIANWL KAR
|
|---|
| |