| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1167 |
|---|
| Symbol | |
|---|
| ID | 4482429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1468145 |
|---|
| End bp | 1468618 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639721910 |
|---|
| Product | polyhydroxyalkonate synthesis repressor, PhaR |
|---|
| Protein accession | YP_865084 |
|---|
| Protein GI | 117924467 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01848] polyhydroxyalkanoate synthesis repressor PhaR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.787915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.108151 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAC CGCGCATTAT TAAAAAATAT CCCAATCGTC GCTTGTATGA TACGGAAACT
TCAGAATTTG TAACCCTGGA GGGGATTCAT AAATTGGTGG TGGAGGGGAT TGAGTTTAAG
GTGATTGACT CCAAAAGCGG GGCCGATGTC ACCCGTACCA TCCTGCTACA GGTGATCGCC
GATGAAGAAG AGAAGGGCGA TCCCGTCTTC AGTACCGATT TTTTGACCAT GATTATCCGT
CTATATGGCG GGGCTATGCA ATCCTTTACC GGGGATTTTC TGAAACAGAG CATTACCTTT
TACCTGGATA ACCAAAAGAG TTTTCTCGAC CAAATCGCTG GCGGCAAACC CCAATCGAAA
CAAGACCCCT ACGGCTTTAT GGCGATGTTT AATAAAGCCG CCGAACAGAA TATGCAGTTT
TGGAACCAGT GGCAGTCCAC CCTCTCTGGG GGTAAAAAAA AGGAGGATAA ATAG
|
|---|
| Protein sequence | MDQPRIIKKY PNRRLYDTET SEFVTLEGIH KLVVEGIEFK VIDSKSGADV TRTILLQVIA
DEEEKGDPVF STDFLTMIIR LYGGAMQSFT GDFLKQSITF YLDNQKSFLD QIAGGKPQSK
QDPYGFMAMF NKAAEQNMQF WNQWQSTLSG GKKKEDK
|
|---|
| |