| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1099 |
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| Symbol | |
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| ID | 4482236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1377362 |
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| End bp | 1380307 |
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| Gene Length | 2946 bp |
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| Protein Length | 981 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639721848 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_865023 |
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| Protein GI | 117924406 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.092428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCGT GGAAATGGGT TGTGGCAACC ATCTTGGCAC TGACGGTGTT GGTCAGTCTG
TTGGTTGCGA GCCATTATTA CTATCTGGAG CAGAGCAATC GCGATGCGTT GAGCCAGCGG
GCGGGTTCGA CGGTGCAACT CTTATCCATA GCGGCTCACC GTGCGGTGTT GTCGGAGGAT
CTGAATACCC TAAAAGATCT CGCACGACAG GCTTTTAAAC AGCCGGATGT CAGTTACTTT
ACCATCCAGG ATGCGGATGG ACATTTTTTG CTGTTTCAGG GGCGTGATGG GATCACCCAG
GAAAACTATA AAAAGCGTGC GGACATGGCC CACGCCGTCG CCATTATTAA AGAGAGCGGC
TATATTTTTG CGATGGTCGA GTTGGGTCTT TCTCGTGCCC AGATGCAGCA GGTGGTCAAC
CGTGCCATGC TGTGGAGCTG GAGTGTCGGG GGGGGGCTGT GGCTATTGGG CTGCTGTGCC
ATTTTAGTGG TTGGTTGGCG GTTGGGTCGG GGGGAGTTGC GCTATCATGG GCTGTTTGCC
AATCACACCG CCATTAAACT GCTGGTGGAC CCTCAAAATG ATTACCGAAT CATTGATGCC
AACGGGGCGG CAGAGCAATT TTACGGGTAT AGTCGGCAGC AGCTCTGCGG TTTAAAAATA
AGCCAAATCA ATGTGCTGTC AGAGCTGGAA ATTGTTCATG AAATGGCAAA TGCCAGCCGG
GAGGGGCGCG ACTATTTTTT CTTTCGCCAC CGGTTGGCCA ACGGTGAAGA GCGTGAGGTG
GAGGTGCACT CTGGCCCAGT ATTGCTGGAT GGCCGCACCA TTCTTTACCA AATCGTACAT
GATGTAACCC AGCGGCGGCG CACAGAGCAG GAGCTGGAGC GGAGTCGTAC GGAGCTGGAA
CTGGCTAATC GGCGTTTACA TACGGTGTTG GACGGGCTGG AAGCCACGGT CTTTGTGGCA
GACAGTCGCA CCTTGCAGGT GCTCTATGTT AACCATGCCA TGTGGGGTCT GGTGGGGGAT
GTGGTGGGGC AGAGTGTGAC CCGGTTGTTT AGTCGCGGTG GAGAAGCGGC CCCCGTTGAA
TTTTGGCAGC CCCAACAGCT TTGGCCCAAG TTGGGGGAGC ATGCTACCCG CGAATATCAA
CACCCCCTGG ATGGTAAGTG GTATCTGGCC CATATTCATG GTGTTGAGTG GTGCGATGGA
CGGCTGGTGC GTCTGGAAAT TGCCACCGAT ATTAGTCGTC TTAAAGAGTC CCAGCGGGCC
ATCCACCAAG CGATGGAGTT GGCCGAGGCA TCCGATCAAG CCAAGGGTGT GTTGTTGGAG
ACGGTTAGTC ATGCCTTTGT GCAGCCACTG CAACAGATTG TGCAGCTGTT GTCGGTCATT
CGTGAAGATC CCCTCCTAAA CCAACAGGGA CACCGGGTGG TTGCCATGGA GCGGGTGGTC
GCGCAGCTCA ATGCGCGCAT TCAGGATCTA CACGCGCTCA GTCAATTACA GGGACAAAGT
GCTGCGGGAT TGGAGCGTGT GCCGTTTCGT TTTGGGCCGC TGCTCGAGCG GTTGCGAGGC
TACGATTCTA TGGTGGCTCT TGCAGAGAGG GGAGCACAGG TTGTTTTGGA TTTGGATGAT
GCCGCCGCCG ATCAGCGCTT TATGGGCGAC CCTGGCCGCT ATCTTCAGTT GTTGAGTGCT
CTGTTACGGA TCTACACCCT GGGGGATCCT AGCGGGCGTA TTGTGCTACG GTTGCTCATT
GCCCAAATGG AGGGGTTGGA GACGACTGTG CATTTGGAGG TTTTGCCAGA GCAGCAGGGT
GTAACCAAAA AGTCGATGCT TTACAGACCT TTATTGCTCA ATCCTCACGT TGTTGAGGGG
GGTGAGCTGG CGTTGTTGTT GGTGGTGCGG TTGGCCGAGT GGTTGGGTGT TTCTGTGGAT
ATTGCCCACG AGGGGGAGGG CTTGCCCGCT TTTCGGTTGC GGTTTCGATT GACGGTCGTG
GAGCACGCCT CCTACCCTGA AAGCGTGGAT GGGCCGCACC TTGTAAATGT TGCCACCACC
TTCGTAGCGA GCGCTTTGCC TGAATATCCC GCAATGGGTG AGTTGCCCGC TGGGGTGGGT
CATGCAGAGG TGATCAGCCA TCTTGGGGTT GGCCATGGAG GGGGGCTTTA CCAAAGGCCC
TTAAAGCTGT TGCTGATTGA GGATGATCTG CCCAATCAAC TCTCTATGCG TAAGCAATTG
GAGGATCGTG GGCACCACGT GTTTCTCGCA CAGACCGGGC CGGAGGGGCT GGCTTTGGCT
CAAGTTGAAA CATGGGATTT CGTGTTGGTG GCGCATCCCG TGGCTGGTAT GAGCGGGCTG
GAAGTGGTGC AGCAGTTGCG CCAAGCAGAG GGTGAGCAGG ATGCAGAGTC GGTGCCTGTG
GTGGTCATGT TGGTAGAGGT AACACGCCAA ATGGTCGAGG CGTCTCATCA GGCCGGTGGA
GACGAGGTGT TGGCAAAGCC CGTTAACACG GAACGGTTAA CCGCCTTGAT CCGGCGTTTT
ACAGGGACAA AAGAGCAGGC GCCAGAGATA TCCGACCCTA TGCAGGAACT TGAGATGACA
CAACAGCTAA ATTATGCGCA TTTGGATAAT CTGTTGGCGG AGATGTCTCT TGAGGCATTT
CAGAAGCTTT CGAGCCGTTT TGAGCAAAAT GCCCTGGGCT ATTTACAAAA AGCGGCGGAG
GGGTTGCAAG CCAGGGATGA AACGGCGGTA CATGTGGCGT TGCACACTTT GGCGGGTTCT
GCGGCAAGCT TTGGCTTGGC CGAGTTGGCG GAGCGCATGC GTCATGCCAG CCACCAAACG
GTCGAAGCGG ATGGTGTTCG GTTAGAGAGT GAAATTTTAC AAGCGCGGGC GGAACTCTCT
ATCGGTATGC AGGAACTAAG CGCTTATGTG GCGGCAAAAC TGGGTGACCA TGCAGAACCG
CAATAA
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| Protein sequence | MFSWKWVVAT ILALTVLVSL LVASHYYYLE QSNRDALSQR AGSTVQLLSI AAHRAVLSED
LNTLKDLARQ AFKQPDVSYF TIQDADGHFL LFQGRDGITQ ENYKKRADMA HAVAIIKESG
YIFAMVELGL SRAQMQQVVN RAMLWSWSVG GGLWLLGCCA ILVVGWRLGR GELRYHGLFA
NHTAIKLLVD PQNDYRIIDA NGAAEQFYGY SRQQLCGLKI SQINVLSELE IVHEMANASR
EGRDYFFFRH RLANGEEREV EVHSGPVLLD GRTILYQIVH DVTQRRRTEQ ELERSRTELE
LANRRLHTVL DGLEATVFVA DSRTLQVLYV NHAMWGLVGD VVGQSVTRLF SRGGEAAPVE
FWQPQQLWPK LGEHATREYQ HPLDGKWYLA HIHGVEWCDG RLVRLEIATD ISRLKESQRA
IHQAMELAEA SDQAKGVLLE TVSHAFVQPL QQIVQLLSVI REDPLLNQQG HRVVAMERVV
AQLNARIQDL HALSQLQGQS AAGLERVPFR FGPLLERLRG YDSMVALAER GAQVVLDLDD
AAADQRFMGD PGRYLQLLSA LLRIYTLGDP SGRIVLRLLI AQMEGLETTV HLEVLPEQQG
VTKKSMLYRP LLLNPHVVEG GELALLLVVR LAEWLGVSVD IAHEGEGLPA FRLRFRLTVV
EHASYPESVD GPHLVNVATT FVASALPEYP AMGELPAGVG HAEVISHLGV GHGGGLYQRP
LKLLLIEDDL PNQLSMRKQL EDRGHHVFLA QTGPEGLALA QVETWDFVLV AHPVAGMSGL
EVVQQLRQAE GEQDAESVPV VVMLVEVTRQ MVEASHQAGG DEVLAKPVNT ERLTALIRRF
TGTKEQAPEI SDPMQELEMT QQLNYAHLDN LLAEMSLEAF QKLSSRFEQN ALGYLQKAAE
GLQARDETAV HVALHTLAGS AASFGLAELA ERMRHASHQT VEADGVRLES EILQARAELS
IGMQELSAYV AAKLGDHAEP Q
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