| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1083 |
|---|
| Symbol | |
|---|
| ID | 4482098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1325819 |
|---|
| End bp | 1328308 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639721832 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_865007 |
|---|
| Protein GI | 117924390 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.220902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGCC CCCCCGATCT GCCCATTGTG GCCACTTTGC AACCGCTGCA AGCGGCCTTG
CTGCGCCATC CCAATGTTAT CCTTAGCGCC CCGCCGGGCT CCGGCAAAAC CACGGTGGTG
CCCTTGGCTC TGTTGGATGC CCCCTGGTTG GCCGGAGAGC GCATCCTTAT GTTGGAACCT
CGACGACTGG CGGCGCGGGC CGCTGCCAGC CGCATGGCCG AGCTGTTGCA GGAGCCGGTG
GGGGAGCGGG TGGGCTATCA GATTCGCTTT GAGCGCAAGG TGGGGCCAAA CACCCGCGTC
GAGGTGGTGA CAGAGGGCAT GCTCACCCGC CGCCTACAGT CCGACCCCGC CTTGCAGGGG
GTGGGGGCGA TTCTGTTTGA TGAGTTTCAC GAACGCTCCT TGCAGGGTGA TCTGGGGTTG
GCGCTGGCGT TGGAGCTGCA ACAGCTGCGT GACGACCTGC GCCTCTTGGT GATGTCGGCC
ACCCTGGAGA GCCAGCGCTT GGCCAAGCTG TTGGGGGATG CCCCCATTAT AGAAGGGCAT
GGACGTAGTT ACCCGGTGCA GGTGCGCTAT GCCAGCCAAC CCTATGCCCA TGTGGTGGAG
GGGGTGGTGC AGACCATTCG TCAGGCGTTG GCCCAGGAGC GGGGGGATCT GCTCGCCTTT
TTGCCGGGGG CGGGGGAGAT CCGCCGGGTG GAGGCCGCTT TGCGGTCAGG CTTGCCCGAT
GATGTGACCC TATTGCCGCT TTATGGCGAG TTGGGTATGC AGGCCCAAGA TCGTGCCGTG
CGCCCCTGGT TGGAGGGAGG ACGGCGGGTG ATCTTGGCAA CGGATATTGC CGAGACCAGT
CTGACCATTC CGGGCATTCG GGTGGTGGTG GATGGGGGGT TGTGTAAACG TCCGCGTTTT
CATGCCAGCA GTGGTTTGAC CCGGTTAGAG CGGCTGCGCA TCTCCGATGC CTCGGCACAA
CAGCGGGCCG GACGGGCAGG GCGGCTGGAG CCGGGGGTCT GTTACCGTAT TTGGCCAGAA
TCGCAACAGC GCATGCTGCA ACCGGCGACC CCTGCGGAGA TACGTGAGGC CGATCTGGCT
CCGCTGCTGC TGGAGTTGGC CCTATGGGGG GTGGCAGATC CGACGCAAAT GAGCTGGCTG
GACCCCCCGC CGGAAGGGGC GGTAGCGCAG GGTTGGGCGC TGTTGGTGGC GCTGGGCGCG
GTGGATGAAG CACGGCATAT CACCCCCTTA GGGCGACAGA TGGCCCAACT GCCGTTGCAT
CCGCGTTTGG CCCATATGGT GTGTATGGCC CCAGAGCCCG CAGCCCAGGC CATGGCCTGT
GATGTGGCGG CGCTGCTCAG TGAACGAGAT CCTCTGAAAG GAGGGGCGCG CCAGGTGGAT
CTGCACCTGC GTTGGCAAAG TGTGGCGCAG TTTCGGCGTC AGGGGAGCGC TGGGCCGGGG
GTGGATGCGG CCAGCCTACA GCGGATTGTG CGGGGGGCGG ACCAGCTACG CCATCTATTG
GGGGTGAGCC GTCAGCAGGT GGCCCATGGT GATCTGGGGC TGCTGTTGGC GGCGGCCTAC
CCCGACCGGG TGGCGCAGTT GCGGCCAGGG CAGCGGGGGC GCTATCTGCT GGCGAGCGGG
CGTGGGGTGC GGTTGGATGA GATGGACCCC TTGAGTGGTG AGCCGCTGCT GGTGGTGGCC
GCGCTGGATG CCGGTGAAGC GGAGGGACGG GCCTATTTGG CGGTCTCTTT GGCGCAAGAG
GCCTTCATGG CGCTTCAGCC GCCGGCGTGG CAGGCGCAGG TGGTGTGGTC TGACCAGCAG
CAGCGGGTGG TGGCAGAGCG CCAGCGCTGT TTTGGCGCGT TGGTACTGGA GCGGCAACCC
CTGCATGGCG AGGCCCCCGA GGCTGCGGTG TTGGCGGCCA TGTTGGTGGG GGTGCGGCGC
ATGGGGCTGG CGGTGTTGCC CTGGACGCCA GCGGCCATGC AGTATCAAGC CAGGGTGCAG
TTGATGGCGC GTCTTGAGTC GGGCTGGCCG TTGTTGGAAG AGGCTGTGCT GCTGGAACAG
TTGGAGCAGT GGTTGGCCCC TTTTCTACGT GGGGTGAATC GGCGGGCACA GTTGGAGCGC
CTGAATATGT TGGAGATTTT GCAAAGTCAA TTAACGTGGT CCCAGCAGCA GAGCTTGGAA
CAGGCGCTAC CGACGCACTA TGAGGTGCCC AGCGGTTCCC GCATTAAATT GGATTATACG
GCAGGGGCGC AGCCGGTATT GGCGGTGCGC ATTCAAGAGC TGTTTGGTTT GGCCGAGAGC
CCGTGTCTTG GCCAGGGGCG GGTGCCGGTT ACGTTGCATC TGCTCAATCC TGCCCAGCGT
CCGGTGCAAG TGACCAGCGA TCTGCGCGGA TTTTGGCAGA CCACCTGGCC CCAGGTGCGC
AAGGAGCTAC GTGGACGCTA TCCCAAACAT CACTGGCCAG AAAACCCCTG GCAGGCCCAA
GCCACCGCCC GCGCCAAACC CCGGAGTTAA
|
|---|
| Protein sequence | MFSPPDLPIV ATLQPLQAAL LRHPNVILSA PPGSGKTTVV PLALLDAPWL AGERILMLEP
RRLAARAAAS RMAELLQEPV GERVGYQIRF ERKVGPNTRV EVVTEGMLTR RLQSDPALQG
VGAILFDEFH ERSLQGDLGL ALALELQQLR DDLRLLVMSA TLESQRLAKL LGDAPIIEGH
GRSYPVQVRY ASQPYAHVVE GVVQTIRQAL AQERGDLLAF LPGAGEIRRV EAALRSGLPD
DVTLLPLYGE LGMQAQDRAV RPWLEGGRRV ILATDIAETS LTIPGIRVVV DGGLCKRPRF
HASSGLTRLE RLRISDASAQ QRAGRAGRLE PGVCYRIWPE SQQRMLQPAT PAEIREADLA
PLLLELALWG VADPTQMSWL DPPPEGAVAQ GWALLVALGA VDEARHITPL GRQMAQLPLH
PRLAHMVCMA PEPAAQAMAC DVAALLSERD PLKGGARQVD LHLRWQSVAQ FRRQGSAGPG
VDAASLQRIV RGADQLRHLL GVSRQQVAHG DLGLLLAAAY PDRVAQLRPG QRGRYLLASG
RGVRLDEMDP LSGEPLLVVA ALDAGEAEGR AYLAVSLAQE AFMALQPPAW QAQVVWSDQQ
QRVVAERQRC FGALVLERQP LHGEAPEAAV LAAMLVGVRR MGLAVLPWTP AAMQYQARVQ
LMARLESGWP LLEEAVLLEQ LEQWLAPFLR GVNRRAQLER LNMLEILQSQ LTWSQQQSLE
QALPTHYEVP SGSRIKLDYT AGAQPVLAVR IQELFGLAES PCLGQGRVPV TLHLLNPAQR
PVQVTSDLRG FWQTTWPQVR KELRGRYPKH HWPENPWQAQ ATARAKPRS
|
|---|
| |