| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1047 |
|---|
| Symbol | |
|---|
| ID | 4482286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1284898 |
|---|
| End bp | 1285653 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639721795 |
|---|
| Product | hemolysin A |
|---|
| Protein accession | YP_864971 |
|---|
| Protein GI | 117924354 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1189] Predicted rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.940085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGCA AAGCCCCCAA ACAACGCCTG GATCATCTGC TTATACAGCT TGGCTTAGCC
AACAGCCCAG CCCAGGCTCT GGGCCTGATT ATGACCGGGC AAGTATTGGT CGAGGATCGC
CCCATGTTTA AACCTGGGGA GGCCGTCCCA GAGAGCGCCG CTATCCGCCT AAAAAACAGC
ACAAAAAGCC GTCAATGGGC CTCGCGCGGG GGGGATAAAT TGGTGGCGGG GCTGGATCTT
TTTCAGATTG ATCCCCAAGG CATGGTGGGG CTGGACATAG GGGCCTCAAC CGGAGGTTTT
ACCGATCTGC TGCTGCAACG GGGGGCCGCC AAGATCTATG CGGTGGATGT AGGCCATGGG
CAGCTTGCTT GGCGCTTGGT GCAGGATGCG CGAGTGATTA ATCTGGAGCG CACCAACGCA
CGAGAACTAA GCCCGCAATT GATCCCCGAG CCCATTGATA TTTTGGTTTC CGATGTCAGT
TTTATCTCGC TGAGCAAAGC ACTGCCTGCC CCGCTGAGCC TCTTAAAGCC TGGGGGGCTG
GGGGTGGTGC TGGTTAAACC CCAGTTTGAG GCACCCCGTG CCGCCGTGGC AACCGGTGGG
GTGGTGCTGG ATCTTGCTGT GCAGCAGCAG TGTGTGGCGC GTATTGCTCA CTGGCTTACC
GCGCAGGGCT GCCGAGTGGT GGGACACACC CCCTCACCCA TCAAAGGCCC CAAGGGCAAC
CAGGAGTATC TGCTGCACTT TAGCAAACCC GCCTGA
|
|---|
| Protein sequence | MSRKAPKQRL DHLLIQLGLA NSPAQALGLI MTGQVLVEDR PMFKPGEAVP ESAAIRLKNS
TKSRQWASRG GDKLVAGLDL FQIDPQGMVG LDIGASTGGF TDLLLQRGAA KIYAVDVGHG
QLAWRLVQDA RVINLERTNA RELSPQLIPE PIDILVSDVS FISLSKALPA PLSLLKPGGL
GVVLVKPQFE APRAAVATGG VVLDLAVQQQ CVARIAHWLT AQGCRVVGHT PSPIKGPKGN
QEYLLHFSKP A
|
|---|
| |