| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1020 |
|---|
| Symbol | |
|---|
| ID | 4482341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1251535 |
|---|
| End bp | 1253181 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639721768 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_864944 |
|---|
| Protein GI | 117924327 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.205797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAT CCACCATGCA ACGATCCCTG AAATTTTTTC TGTGGTGTGC CTTGACGTGG
GCGGTTTGCT TGACGGCACC CCTGGCGAAG GCAGCCAGCC AAGATGATCT GCAACGTCTG
AATAATCGAT CTTTTTCTGT TAAAATGCAG GCGATTAAAG AACTTGGTGC CAGTGGTGAT
CGGGCCTTAG TGCCCGCGCT GACCGCTTTG TTAGAGGGCA ACCTCTATGG ACGTAAAACC
GATAACATGG TGGTGATCGG CCAAAAAAGC GGACAAGTTT ATCTATTGAT TGATCCATTA
AGCGGTCAAG AGCTGGGGCA GGTGCAGGAG AGTGCGCTGG CCAAGATTGG CATCAACAAC
CGGCTGCGGC GGTTGATTCG GGGTGCCCTG GGGGGCTTGA CCCTGCTGAG CAAAGATCCT
GCCCTACGCT TACAGGCGGC CCAATCCATT TTTAATAGTC GGGATGTGGA GCTGCTGGAG
AGCCTGCAAC AGGCCATTGC CCGCGAAGAG GATGCCACCA TTCTGGCTGC TATGCAGAAG
GCCCAAGCGG TGATTGAGCT GTTTCATGGC GAGAGCTTGG AAAAACGCAA AGCAGCCGTG
ATTTTGCTGG AACAGGTGGG TGGGCAGGAT GTGCGGGCGC TGCTCTCGCA ACTGGTGCAG
GAGCCGGATC TGCACAACAA CCACGCGGAG CTGTATGGTG TGGTCAAGGC TGCGCTGGAG
CGGGTTGAGG AGCGCTTAAG ACTATGGAAC ATGGTGGGTA GCCTGTTCCA GGGCATCAGC
CTGGGTTCGG TGTTGCTGTT GGCGGCGGTG GGGTTGGCCA TCACCTTTGG GGTGATGGGG
GTGATCAATA TGGCCCATGG TGAGCTGGTT ATGTTGGGGG CCTATACCAC CTTTGTGGTA
CAGGATCTGT TTCGGGCCTA TCTGCCGGAT TGGTTGGATT GGTCGTTGCT GGTGGCGGTG
CCCATGGCCT TTTTGGTCTC TGGTCTGTTT GGGGTGGCCA TTGAACGGGG CATTATCCGC
TTTTTGTATG GGCGCCCCCT GGAGACCCTG TTGGCGACCT GGGGCTTGAG TTTAATGCTG
CAACAGTTGG TGCGCACCCT GTTTGGACCC ACCAACCAAG AGGTCAGCAA CCCTTCATGG
ATGAGTGGGG CGATTCAAAC CAGTCAGGGC TTGGTGCTCA CCTATAACCG TATCACCATC
ATTCTCTTTT CGCTGGCGGT GATCGGTTCC TTGGCGTTGG TGTTGCGCAA AACCTCGCTG
GGTTTGCAGA TGCGCGCGGT GACGCAAAAC CGCCGCATGG CCGGCTCCAT GGGCATCCGT
ACCGGCTGGG TGGACGCGCT AACCTTTGGT TTGGGGGCGG GTATTGCGGG CATCGCGGGG
GTGGCGCTTA GTCAGGTGGA CAATGTTTCA CCCAACCTGG GGCAGAGCTA CATTATTGAT
AGCTTTATGG TGGTGGTGTT TGGTGGGGTG GGCAACCTGT GGGGCACTCT GGTGGGGGCC
TTTAGCTTGG GGGTGTTGAA TAAATTTATG GAGCCCTTGG CAGGGGCGGT GCTGGGTAAA
ATTTTGGTGC TGGTCGGCAT TATTCTGTTC ATTCAAAAAC GCCCCAGGGG ATTGTTTGCC
CTAAAAGGGC GGGCGGTGGA GGCATAA
|
|---|
| Protein sequence | MDRSTMQRSL KFFLWCALTW AVCLTAPLAK AASQDDLQRL NNRSFSVKMQ AIKELGASGD
RALVPALTAL LEGNLYGRKT DNMVVIGQKS GQVYLLIDPL SGQELGQVQE SALAKIGINN
RLRRLIRGAL GGLTLLSKDP ALRLQAAQSI FNSRDVELLE SLQQAIAREE DATILAAMQK
AQAVIELFHG ESLEKRKAAV ILLEQVGGQD VRALLSQLVQ EPDLHNNHAE LYGVVKAALE
RVEERLRLWN MVGSLFQGIS LGSVLLLAAV GLAITFGVMG VINMAHGELV MLGAYTTFVV
QDLFRAYLPD WLDWSLLVAV PMAFLVSGLF GVAIERGIIR FLYGRPLETL LATWGLSLML
QQLVRTLFGP TNQEVSNPSW MSGAIQTSQG LVLTYNRITI ILFSLAVIGS LALVLRKTSL
GLQMRAVTQN RRMAGSMGIR TGWVDALTFG LGAGIAGIAG VALSQVDNVS PNLGQSYIID
SFMVVVFGGV GNLWGTLVGA FSLGVLNKFM EPLAGAVLGK ILVLVGIILF IQKRPRGLFA
LKGRAVEA
|
|---|
| |