Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1004 |
Symbol | |
ID | 4481169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 1234896 |
End bp | 1236563 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639721752 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_864928 |
Protein GI | 117924311 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.356957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTCT CATTTGATGG TCAACATCTT CTTCACCATC TGGCCGATGG CATCATTATC CATGAGCAGG ATATGATTCT CTACGCCAAT GAGATTGCCC GCATTATGCT GGGCACAGAG ATCCACACGG ATCTAACTCA AAGCCTCTTT TCACTCCGCA TTGACCCCAC CTGCCGGGAA GCTTGGTTAC ACAACGGGGC CAACCATAGC CACGAGGCCG ACAGGGTTAA ATTGGTCGAC CTCAAACTGC TGCCCGAAGC CAAACCCTTT ACGCATGTCG AGGCATTGAC CATCCCCTTT CAGGGTAATG AACGGCTGCT GGTCACCACG CTGCGGGATA TTAGCGAGAA AAAACGTCAA GAAGAGCGTA TACGCCATCA AGCCAACTAT GATGCCCTTA CCGGCCTGCC TAACCGTGGC CTGTTTTTAG ACCGTTTAAA GCTGGAGCTG GCACGGGCCA AACGTACCGA CGTGCGTGTC GCGGTGATGT TTATTGACCT AGACCGCTTT AAGTGGGTCA ACGACACCCT GGGTCATGCG GCGGGGGACG ATCTGCTGCG AGAGGCCTCC AAACGGCTGC TCTCTTGTCA TCGCCAATCG GATACCGTGG CCCGCATGGG GGGGGATGAG TTTACGGTTA TCCTGCCCGA CATGGCCCGT GGTCCCCATG CTGAGCGGGT GGCGGCGCAA ATTTTAGAGC AACTCGCCGC CCCTTTTACC CTGGAGGGTC AGGAAGTTAC CATCTCAGGA TCGGTGGGTG TCACCATTTT TCCCGACGAT GCGGACAACC TGGATGATCT GCTTAAAAAC GCCGATACTG CCATGTACCG GGCCAAGTCC CAAGGCCGCA ACGCCTACCG TTTTTATACC CCCGACATGC ATGCCGAGGC GATGGCCCGT ATGGCCCTGG AGCGGGAGCT TTCCAGTGCG GTAGAAGACC AAGAGTTGGC GCTCTGTTAT CAACCGATTG TTGATCTTAA TACCAATCGA ATCGCCGGGG CTGAAGCCCT GTTGCGCTGG AACCACCCCA CCTTAGGGGC GGTCTCGCCT GAGGTGTTTA TACCCATTGC CGAAGAGATG GGGTTAATCG CACAGATTAC CGAATGGGCC GTGCGCGAGG CGTGTACCCA AGCCTGCCAA TGGCGCAGCC AATATGGTAC GGCCAAAGAT TTTTTTATCT CGGTCAACCT AACCTGCACC CGCTGCCGGG AGCTTTCCAC CGACGACAAA ATCCCCTCTA TCCTGGCCGA GACCCAACTG CCCCCCCACG CGCTGGTGCT TGAGGTAACC GAGACCATTT TGGGCGAAGA CCCCCCCAAA GCGATGGCAA TGCTTAACCA CCTGAAACAG ATCGGTGTGC GCTTATGGCT GGACGACTTT GGCACCGGCT CATCCTCATT AAGCGTGTTG CGCAATCTGC CGGTTTGTGG GGTTAAAATT GACCGTACCT TTGTACCCGA TGCCCTTAAT GATAAAGAGG CCGAGGTGCT GGTCACCACC ATCATCAACA TGGGCCGCAG CCTTAACCGC ATTTTGATTG GTGAAGGGGT GGAAACCGAA GCCCAACGCC TCTATCTAGA GGGCAAAGGG GTGCAACTGG CCCAGGGCTA TTTTTTTGGT AAGCCCTGTT CTGCCGCCGA ATTTCCCGAT CAATTTTTTG ACCACTGA
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Protein sequence | MDFSFDGQHL LHHLADGIII HEQDMILYAN EIARIMLGTE IHTDLTQSLF SLRIDPTCRE AWLHNGANHS HEADRVKLVD LKLLPEAKPF THVEALTIPF QGNERLLVTT LRDISEKKRQ EERIRHQANY DALTGLPNRG LFLDRLKLEL ARAKRTDVRV AVMFIDLDRF KWVNDTLGHA AGDDLLREAS KRLLSCHRQS DTVARMGGDE FTVILPDMAR GPHAERVAAQ ILEQLAAPFT LEGQEVTISG SVGVTIFPDD ADNLDDLLKN ADTAMYRAKS QGRNAYRFYT PDMHAEAMAR MALERELSSA VEDQELALCY QPIVDLNTNR IAGAEALLRW NHPTLGAVSP EVFIPIAEEM GLIAQITEWA VREACTQACQ WRSQYGTAKD FFISVNLTCT RCRELSTDDK IPSILAETQL PPHALVLEVT ETILGEDPPK AMAMLNHLKQ IGVRLWLDDF GTGSSSLSVL RNLPVCGVKI DRTFVPDALN DKEAEVLVTT IINMGRSLNR ILIGEGVETE AQRLYLEGKG VQLAQGYFFG KPCSAAEFPD QFFDH
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