| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1001 |
|---|
| Symbol | |
|---|
| ID | 4481166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1231035 |
|---|
| End bp | 1231883 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639721749 |
|---|
| Product | sterol desaturase-related protein |
|---|
| Protein accession | YP_864925 |
|---|
| Protein GI | 117924308 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3000] Sterol desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGCT GGCTGTTGCA GCAGGAACCC ACGCTAAGAG TGGTGGCCTT CTTTTCGATT
TTTCTGCTGA TCGCCGTGTG GGAGTGGTGG CGTCCCCGGC GGGTGCCGCG CCATCCCCGC
ATGCAACGCT GGCCCGCCAA TCTTGGACTG GTGCTCATCA ATACCCTATT GGTGCGGCTG
CTGTTTCCCA TGGCGGCGGT GGTTTGGGCG GCCCAGGTGC AGCAGCAAGG GTGGGGACTC
TTGCAAATGT GGTCCCTCCC CAGCCTATGG GCGCTGCTAC TTGGGGTGGT GCTGTTGGAT
GGGGTTATCT ATCTGCAACA TGTATTGGTC CATGCACTGC CGCTGCTGTG GCGGCTGCAC
CAGGTTCATC ACGCCGATCC TGACTACGAT GTGACCACGG GTGCCCGCTT TCACCCTATA
GAAATTTTAC TCTCCATGGG TATTAAATTT GCGGCGATCC TCTGTTTGGC CCCGCCACCT
GCGGCGGTTT TGCTGTTTGA GGTGATTCTT AATGGCATGG CGATGTTTAA CCATGGCAAC
ATCACGCTGC CTTTGGGGTT GGATCGGTTG CTCCGTTGGC TGGTGGTGAC GCCAGATATG
CACCGGGTTC ACCACTCCAC ACTACCCTCC GAGGCGAACA GTAACTTTGG CTTTAACCTA
AGCCTTTGGG ATCGTCTGTT TGGCACCTAT ACGGCCCAGC CCAAACGGGG TCATGTGGCG
ATGGAGATTG GTATCACGAC CCATCAAGGG CCGCACACCC GCTCGTTGCT GGGGATGTTA
AGGCTGCCAT GGCAGACGGC GCAGGATCGT TATGCGCTGA CCCGTCGTTG GTCAGACCCC
GATGCGTGA
|
|---|
| Protein sequence | MDSWLLQQEP TLRVVAFFSI FLLIAVWEWW RPRRVPRHPR MQRWPANLGL VLINTLLVRL
LFPMAAVVWA AQVQQQGWGL LQMWSLPSLW ALLLGVVLLD GVIYLQHVLV HALPLLWRLH
QVHHADPDYD VTTGARFHPI EILLSMGIKF AAILCLAPPP AAVLLFEVIL NGMAMFNHGN
ITLPLGLDRL LRWLVVTPDM HRVHHSTLPS EANSNFGFNL SLWDRLFGTY TAQPKRGHVA
MEIGITTHQG PHTRSLLGML RLPWQTAQDR YALTRRWSDP DA
|
|---|
| |