| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0977 |
|---|
| Symbol | |
|---|
| ID | 4482970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 1197840 |
|---|
| End bp | 1198724 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639721725 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_864901 |
|---|
| Protein GI | 117924284 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0152042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.193057 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACTTA TTACCGGAGC CACAGGATTT GTTGGACAAG CCCTCATTCA ACAACTTGTC
TCTGAAGGTC ATAAAATTCG CGCCCTCGCC CGTCATATAC CCGCAAGGCA CGCGCCAGAG
GGGGTCCAGT ATGTCGCAGG GGATATTCAG ATCCCCAGCT CCCTACAAAC GGCCATGGAG
GGGGTTACGT GTGTGATACA TCTGGTGGGT ATTTTGGCCG AACAGCGCCA CCGTAGCTTT
GAGGAGATTC ACCACCAAGG CACCCTAAAC GTGCTGCAAG CGGCCAAGCA GGCAGGGGTT
AAACGGTTCC TCCACATGAG CAGTCTGGGC ACCCGGGCCA ATGCCGTCGC CCGCTATCAC
CAGAGCAAAT GGCAAGCCGA GTGCGCCGTG CGGGAGAGTG GCCTAGACTA CACCATTTTT
CGCCCCTCGG TGATTTTTGG CCCCGGGGAT AACTTTGTAA ACCAATTTGC CCGCATGATC
CGTTTTTCTC CCATGGTGCC TATCTTAGGG GATGGGCAAA ACCGCATGCA GCCCATCGCC
GTGGGGGATG TCGCCCGCTG CTTTGCCATC GCCCTAACAG ACCGCCAAAC CCTTGGCCAG
ACCTACGAGT TGGGTGGTCC ACAGCAGCTC ACGTTTCAAG AGATCATGGA GAACATTTTG
GATGCGCTGC ATAAAAAGCG CTTTAAACTA CGCCTACCCT TTGCCCTGCT CAAGCTGGAG
GGTAAAATTT TTGAGGTGCT GCTCAGCAAC CCCCCGCTCA CCTATGACCA GATGCTTATG
GCCCAGGAGC ACAATGTCTG CGCCGCTGGC ACTTCGTTGC CCACTCCCTT TACCTTTACT
CCATTAGCCT TTGCCGAGGG CATTCGACGC TACCTAACCC CCTAA
|
|---|
| Protein sequence | MILITGATGF VGQALIQQLV SEGHKIRALA RHIPARHAPE GVQYVAGDIQ IPSSLQTAME
GVTCVIHLVG ILAEQRHRSF EEIHHQGTLN VLQAAKQAGV KRFLHMSSLG TRANAVARYH
QSKWQAECAV RESGLDYTIF RPSVIFGPGD NFVNQFARMI RFSPMVPILG DGQNRMQPIA
VGDVARCFAI ALTDRQTLGQ TYELGGPQQL TFQEIMENIL DALHKKRFKL RLPFALLKLE
GKIFEVLLSN PPLTYDQMLM AQEHNVCAAG TSLPTPFTFT PLAFAEGIRR YLTP
|
|---|
| |