Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0971 |
Symbol | |
ID | 4480493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 1185431 |
End bp | 1187206 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639721719 |
Product | TPR repeat-containing protein |
Protein accession | YP_864895 |
Protein GI | 117924278 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00189563 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTAACAC CCCAGGCTTT GGCTCTGACC CCAGAACGAC AGGATGCCTC GACAGCTGAA CAGGAACAAT GGCTCACCCG ACTCACCCGC CATTATGTCC ATACCAACTT GGCGCTACCC CAGCCCGGCG TCTACCAAAA AACCATTGAC CTGCTCAGGC AAGAGCTTGA GCGGCTCTTT TTAAATGCAC CCGCAGACCT TATGTTCACC CCCAAGCTGC GGGCTGCTTT ACAAAGCCTT GCCCACGGCG ACCTTGACGC CACCCAACGT CAAATCGCCC TCTTGGATCA ATCTTTTAAT CATGCTTACA ACAAATACCA TCCGCTCTAT TTACCCCTTT ACCGACTACA AGCGGCGCTA CAGCAACAAC AAGGTAACCC GGCGGAAGCC CTCACGACCC TAGAAAAACT GCTACAACTT GAAGAGCGAC TACTCAGCGA TAGTCATCCT GCCCTCTACC GAACCTTATT AAACATGGGC GACTTGCTGA TTTTGCTCAA CCGCATGGAG GCCGCCAAGG GTTACTATGA GCGAGCCTTG ACCCTATTCA TGAAAAACCC TGGCCCCTAT CAACAGGCCC GCATAACTCT GCTTAACCGT TTAAGCCAGA TTGAGATGGC CGCACACCGC CCCAAACAGG CGGTACTGCG CTTAGGCACG GCGCTCTCCA TGGAAGAGGC CCGTCTGGGC CATGAGCACC CTGCCCTCAT CACCACGCTG GATCAACTGG CCACGGCCCT AACCCTAGCC GGTCGTCAAT CTGAAGCGAT CAAGCAGATT GAACGCGCCC TTGCCATCTG CACCACCCAG TTAGGGGGAA ACCCCATGCT CACCGCCCAA CTTACCGGTC GTTTGGGGGA TCTGGCCGTA GAACAGCAGC AGATGGCACA AGCCGGTCAT TTTTACCAAG CTGCCTTGCA TACCTTAACC ACAACCCATT TAACAGAAAA CGACCATTTC CCCACACTCA AACTAAAGCA GGCTTTTATT CATCAAATTT TAGGGGAGTG GTGGCAAGGC GAGTTGGCTC AACGCACCGG TTTAATGGGG CTACAGGCCC ACCCACCCCC ACCCGGTAGC CAGATTAGCC TTAACCGCGA GGTTGCCACC TATCGCCAGC TTATCCAGGC ACTCAACACC TTAATTTGGA ATACCGACAC ACAACCAGAC AATCTGAAGG GGGCCATTCT TACCCTCCAG CAACGCCTCA AGGATCTGGG TTTCAATCCC GGTGAGATGG ATGGACATCC AGGCCCCAAC ACCTTGGCCG CACTCACCGC CTGGCGCAAT GCCCTGGGCA TTGCTGCCCC CCCCATGCGT TGGCGTTTGA GCACCCTGCA ACGCGCCTTG CAAGAGGTAC CGCCCGCACC GCGCCCCACG CCAAATGATT TGGTGGATAT GATTCGCCAC GAGCAGGCAA TGTCAGAGCA GCACACCACC GAAGAGCCCC TGGACTCCAC CAGCGCCATC ACCGACAAAC AACGTGCGGA GGCGGCCGCC AAAGCTGCTG ACGCTGCCGC CGCCCCCCCG CGCCAGGAAG CCGCCACCCC GGCGGTTGAC CAGCCAAGCC CAGACGCTAT AAAACCCCCT ACCGTGATCT CCAACACACC CTCGGCGCCA GTTGCCGCAC CCACAAAACC TGCTGCCCCT GAGACCCACG GCACGCCGTT GCAACCCACC GAGGCTGCCA GCCATAAACG GCATCCGCAA CCCACGGCAC CCGCAACAGT TCTACCCGCT ACGGGACAAA CGGCCCACCC GAGCACTGGA GATTGA
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Protein sequence | MLTPQALALT PERQDASTAE QEQWLTRLTR HYVHTNLALP QPGVYQKTID LLRQELERLF LNAPADLMFT PKLRAALQSL AHGDLDATQR QIALLDQSFN HAYNKYHPLY LPLYRLQAAL QQQQGNPAEA LTTLEKLLQL EERLLSDSHP ALYRTLLNMG DLLILLNRME AAKGYYERAL TLFMKNPGPY QQARITLLNR LSQIEMAAHR PKQAVLRLGT ALSMEEARLG HEHPALITTL DQLATALTLA GRQSEAIKQI ERALAICTTQ LGGNPMLTAQ LTGRLGDLAV EQQQMAQAGH FYQAALHTLT TTHLTENDHF PTLKLKQAFI HQILGEWWQG ELAQRTGLMG LQAHPPPPGS QISLNREVAT YRQLIQALNT LIWNTDTQPD NLKGAILTLQ QRLKDLGFNP GEMDGHPGPN TLAALTAWRN ALGIAAPPMR WRLSTLQRAL QEVPPAPRPT PNDLVDMIRH EQAMSEQHTT EEPLDSTSAI TDKQRAEAAA KAADAAAAPP RQEAATPAVD QPSPDAIKPP TVISNTPSAP VAAPTKPAAP ETHGTPLQPT EAASHKRHPQ PTAPATVLPA TGQTAHPSTG D
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