| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0949 |
|---|
| Symbol | |
|---|
| ID | 4482748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1166249 |
|---|
| End bp | 1167202 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639721697 |
|---|
| Product | tRNA synthetase, class II (D, K and N) |
|---|
| Protein accession | YP_864873 |
|---|
| Protein GI | 117924256 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2269] Truncated, possibly inactive, lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00462] lysyl-tRNA synthetase-like protein GenX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000776878 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000118121 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGGAGAGCG TGACACAGTG GCGACCGGGT TGCGGTGGTG AACGGTTGCG TCAGCGTGCC
CGGCTTTTGG CGCAACTGCG GGCGCATTTT GCGCGTACCG CTGCGCTGGA GGTCGATCCA
CCTGCTTTAC AGCGTGCCAT TGCTCCTGAA CATCATATCG AGCCCATCCG CTGCTACGAT
GGCCAACAGC TTTGCTACCT GCATACCTCG CCAGAGAGCT GCATGAAGCG GCTGTTGGCC
GCTGGCAGTG GTGATATCTA TTTTCTGGGT AAAGTCTATC GTAGTGAAGA GCAAGGAGAG
CACCACAACC ACGAGTTCAC CCTGTTGGAG TGGTACCGCG TGGGCTGGTC GTTAGCCCAG
TTGCAGGATG AAACCGCTGG CTTGATTGGG GATCTATTGG GTATAAAAGC AGGTTGTGCC
ATGAGCTATG CCCAAGCCTT TATGCAGGTA GGTGGGCCAG ATCCCCATAC GGCCACAATG
GCCGAGCTGC TGGCGTGGGC CGAGCAGCGG GCCGTGTCAT TGCCAGCCGA ACTGGAGCGA
GGGGCGTTGC TGGACTATCT GCAAGCGGTG GTGGTGGAGC CCCAGTTGCC CCATGAGCAG
GTGGTGGTGG TTAACGGTTT TCCCGCAGAG CGGGCGGCCA TGGCGCAGAT TGATCCGGGT
CCCCCCCCGG TGGCCCAGCG GTTTGAGGTT TACGTCAATG GGGTGGAACT GGCCAATGGT
TATCTGGAGC TAACCGACGG GGCTGAACAA CGGCACCGTC TGGAACAGGT CAACGCGCAG
CGCCTTGTGC AAGGGTTATC CCCCATTGCT GTGGATCAAC GCTTTCTCGC CGCCTTGCAG
GCCGGGTTGC CGGCGGTGAG TGGGGTGGCG CTGGGGGTGG ATCGGCTGCT GATGTTACAA
TGTGGCGCAA CCTCTCTGGA TGAGGTGATG CCCTTTTCGC AACAGCGGGT CTAA
|
|---|
| Protein sequence | MESVTQWRPG CGGERLRQRA RLLAQLRAHF ARTAALEVDP PALQRAIAPE HHIEPIRCYD
GQQLCYLHTS PESCMKRLLA AGSGDIYFLG KVYRSEEQGE HHNHEFTLLE WYRVGWSLAQ
LQDETAGLIG DLLGIKAGCA MSYAQAFMQV GGPDPHTATM AELLAWAEQR AVSLPAELER
GALLDYLQAV VVEPQLPHEQ VVVVNGFPAE RAAMAQIDPG PPPVAQRFEV YVNGVELANG
YLELTDGAEQ RHRLEQVNAQ RLVQGLSPIA VDQRFLAALQ AGLPAVSGVA LGVDRLLMLQ
CGATSLDEVM PFSQQRV
|
|---|
| |