Gene Mmc1_0931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_0931 
Symbol 
ID4481583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp1142232 
End bp1143887 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content54% 
IMG OID639721679 
Producttype II secretion system protein E 
Protein accessionYP_864855 
Protein GI117924238 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.1993 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0211669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGATC AGCCGCGTAA AAAACCCATT GGTGTGCTGC TGCAAGAGAA GGGTTTGATC 
TCCGATGCCC ACATCGGTCT GGCTTTGCAG GATCAGAAAA TCACAAAAGA GCGGGTGGGT
GAAATTCTTG AGCGGTTGGG CTTTGTCTCC CAGTACGATG TGGCCACCAC CATCTCGGAG
CAGGAGGATC GCCCCTATCT GGATATTAAC GCGGTACGCC CAGCGGAGGA GAGCCTGCGG
CTGTTTAACC GCAATATCTG CGAACAAAAC GATTTTTTGC CCATGCGCCA TGATACCCAA
GCCGGGGCCA TTGAGTGCGT AACCGCCGCA GATGATGTGG TGGCCCTGGA TAAATTGATT
ACCCGCCATA CCGGTTTAAA GCCCTTCTTT TACCAGGGGG AAAAGGGCAA AATCCGCAAT
GCGGTGCAGT ACTATTACTA TTTTCTGGAA AACCCGGTGG AGAAGTTGCT GGAGCGGGAA
ATCCAGTTGC TTAGTATGGA TAAGGATGAT GTGCGCAATC TGGATAACTT TGTGGCGCAT
CTTTTTCAGT TGGCGGTTAA AAACCGCGCC TCGGATATTC ATATACGCCC CATGGACCGG
GCGATTAACA TCGCCTTTCG TATTGACGGT GTGTTGCGTC CCATGTTTTC CCTGCCCCCC
AGCATGAAAC GGGTGATTAC CACCCTGAAG ATGCGGGCGG ATATGGATAT TGCCGAGCAG
CGTCTGCCCC AGGATGGGAG CTTTGGTGAG ACCATTTTGA CCAACCACTA TGATTTTCGG
GTCTCCACCA CGGTTTGCCC CTATGGGGAA AATATGGTGA TGCGTCTGTT GCCCGCCAAG
AGCGACTTTA TGGGCCTGCC CCAGTTGGGT TTTGAACCCG ACGATATTGA GCTGGTGCGG
CAGATTTTTA ACGAACCCTA TGGCATTGTG CTGCTGACTG GGCCGACCGG ATCGGGTAAG
ACCACGACGC TGTATGCGGC GGTGCGGGCG TTAAACTTGA CCGAAAAGAA TGTGATGACG
GTGGAAAACC CCATCGAATA TCGTATTCCC TTGATGCGCC AGACCCAGAT TAATACCAAG
GCTGGTTACA CCTTCTCCAG CGCCATTCGC CACTTTTTGC GGCATGATCC AGATGTTATC
TTGGTGGGGG AAATTCGCGA TAAAGAGACC GCCGAAACCG CCATCTCCGC CTCGGAGACC
GGCCACTTGG TGCTCTCGAC CTTGCACACC AACACCGCCT TTGGTGCGTT GCCCCGTTTG
CGTTCGCTGG GGATCCCGCC CTTTATGTTG GCCGATTCTT TGGTTGGGGT GGTGAGTCAG
CGTTTGGTCC GTAAAATTTG CCCCACGTGC AAAGAGGCCT ATACCCCCAG TCAGGAGGAG
TTGGACTACC TCAAGATTGA GGGGTTGGAT ACCCTCTACC GGGGGGTGGG GTGTGAAACC
TGCTTTGGGA CAGGTTTTCA TGGTCGTACC TTGGTCTATG AGGTGCTACG TTCGTTCCCC
GCCTTGGCGG TTGCCATTGG TAATGATGCG ACCTTGGATG AGATGCGCCA TATTGCGGTA
AGCAATGGGT ATCGTGAGAT TGAGACCTGT GCCCACGCCA AGCTGGTGCG GGGAGATGTC
TCCCTGTCAG AAGTGGTGCG GGTGCTGGGT TATTAA
 
Protein sequence
MNDQPRKKPI GVLLQEKGLI SDAHIGLALQ DQKITKERVG EILERLGFVS QYDVATTISE 
QEDRPYLDIN AVRPAEESLR LFNRNICEQN DFLPMRHDTQ AGAIECVTAA DDVVALDKLI
TRHTGLKPFF YQGEKGKIRN AVQYYYYFLE NPVEKLLERE IQLLSMDKDD VRNLDNFVAH
LFQLAVKNRA SDIHIRPMDR AINIAFRIDG VLRPMFSLPP SMKRVITTLK MRADMDIAEQ
RLPQDGSFGE TILTNHYDFR VSTTVCPYGE NMVMRLLPAK SDFMGLPQLG FEPDDIELVR
QIFNEPYGIV LLTGPTGSGK TTTLYAAVRA LNLTEKNVMT VENPIEYRIP LMRQTQINTK
AGYTFSSAIR HFLRHDPDVI LVGEIRDKET AETAISASET GHLVLSTLHT NTAFGALPRL
RSLGIPPFML ADSLVGVVSQ RLVRKICPTC KEAYTPSQEE LDYLKIEGLD TLYRGVGCET
CFGTGFHGRT LVYEVLRSFP ALAVAIGNDA TLDEMRHIAV SNGYREIETC AHAKLVRGDV
SLSEVVRVLG Y