| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0928 |
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| Symbol | |
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| ID | 4481580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1137257 |
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| End bp | 1138981 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639721676 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_864852 |
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| Protein GI | 117924235 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0351042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.287685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAATG CTCGCGTATA CAAAGTGTGG CTGTTGGGTT TGCTGCTGCT CTTGGGTGGC
TGCCAATCTC TTGGTATGCC CAACAAAAAT GCGGATAAGC AAGGGGAAGT GAGTAAAGGT
AGCGCTCTGC AAAAAGCCCA TGCTGCGCTT GCCAAAGAGT CTGATGAGAT CGCCCGCCAG
CGCCACGAGC TGGTGCAAGA TATGAAAGCG CTGAGCGTGG GTCTGACCGA AGGGCGCGAC
ATTCATCGGG TTTTGGCCCG CGAAGGGGCC CACATGGATG ACCGCATGCG GGCCATCCAA
CGGGACTTGC AACGCACCGC GAGCGAACCC CCGCCGCCTC TGCCGGTGCC CCCGGTCTAT
AATCCCCTGG ATGACCTAAA GGTCAGTCTG GAGATGGACA AAGAGGATGT ACGGCATATC
CTCAAAGCGC TGGCCAAAAT GACCCGTATG AACCTGCTGA TTGATCCTCG GGTGTTGGAG
GAACCTCCGG TGATTACGGT CTCCTTCCGG CAAATGCCCG CCTCGCAGGT GTTTGAAGAG
ATCCTACGCT TGGCCGACCT CTATGGTGCC ATTGATGGGA ATATCTTGCG GGTCCATATG
TTCCAGGAGA TGACCTATCC CCTGGAGTTC TTAGAGACCA CCTATAAGTC CAACTTCTCC
GTGGGCGGGG ATGTGCTGGG CAATGCGGGT TCCGGCCAAG GCGGGGGTAA ATTAACCGGC
TCTTACAGTA TGAGCGGGGC CTCTGGCAAC ATTACCAACC CCTATGACGC CATTGAACCC
ATCATCCAAA ATTTGATCAG CAGTCAGGGT ACCGAAGGTC AAGCCTACTC CCTGAACCGC
ATGACGGGGA CCTTGCATCT TAAAGCGCGT CCTTCGGTGG TGCGCACCGT GACCAAATTG
GTGGATCAGT TTAAAGAGGT GATTGGCCGT CAGGTGTTGA TCGAGACGCG GGTGATGGAG
ATTACCCTCA ACGAAACCTA TCGCACCGGG GTCGATTGGT GGGCTTTTAA GGGTAGCATC
GCCGCCATGA TGGGGCAGAG CGGGACCTAT ACGGGCCGTA TTGGTAGCAC CAACGCCCTG
AGTAGCAACA CATTTGGTTT GGCGGATATT AGCTATCCTA CCACCACCAC CGCCGCAACG
GGTTTGGGCC TAGTGATCTC TGGAGCCAAT GGTGCGGCGA TTGTGGATCT GCTGAAACAG
TTTGGTGATG TCCAGGTGCT CTCGAATCCC ACCATCCGGG CACGTCACGG TCAACCCTCG
ATGATCAGTG TGGGTACCAG TAACACCTAT GTTTCGGAGA GTGAAATCAC CACCACCGGT
ACCGGGACCA CCGCCACGAC CCAGGCCGAT GTGGTGGTCA ATACGGTGTT TGATGGTCTG
ATGATCGGGG TGACGCCCTT TATTAAAGAG GATGGTCGGG TGGTGATGAC CGTGCATCCC
ATTAAGAGCG ACGTGACCGC CTCTAGTCTG GATCTGGTTT CGGTTGGCGG CACCAATCAG
GTGGCCCTGC CCGAGGTGGA GTTAAAAGAG ATGAGCACCA TTCTAGAGAC CCATAGTGGG
GATCTGGTCT TTTTGGGTGG TCTGATTGAT AAGGAAAAAA GTGCCACCAA AACCGGTATG
CCGCTGCTGG GGGATATTCC GCTGTTAGGC CGTCTTTTTT CCACCGATTC TAGCAGCGAT
AAAACCCGTG AGATGATTAT CATGCTGCGG GTTTCGGTAC TGTGA
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| Protein sequence | MSNARVYKVW LLGLLLLLGG CQSLGMPNKN ADKQGEVSKG SALQKAHAAL AKESDEIARQ
RHELVQDMKA LSVGLTEGRD IHRVLAREGA HMDDRMRAIQ RDLQRTASEP PPPLPVPPVY
NPLDDLKVSL EMDKEDVRHI LKALAKMTRM NLLIDPRVLE EPPVITVSFR QMPASQVFEE
ILRLADLYGA IDGNILRVHM FQEMTYPLEF LETTYKSNFS VGGDVLGNAG SGQGGGKLTG
SYSMSGASGN ITNPYDAIEP IIQNLISSQG TEGQAYSLNR MTGTLHLKAR PSVVRTVTKL
VDQFKEVIGR QVLIETRVME ITLNETYRTG VDWWAFKGSI AAMMGQSGTY TGRIGSTNAL
SSNTFGLADI SYPTTTTAAT GLGLVISGAN GAAIVDLLKQ FGDVQVLSNP TIRARHGQPS
MISVGTSNTY VSESEITTTG TGTTATTQAD VVVNTVFDGL MIGVTPFIKE DGRVVMTVHP
IKSDVTASSL DLVSVGGTNQ VALPEVELKE MSTILETHSG DLVFLGGLID KEKSATKTGM
PLLGDIPLLG RLFSTDSSSD KTREMIIMLR VSVL
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