| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0887 |
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| Symbol | |
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| ID | 4483380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1084668 |
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| End bp | 1086401 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639721636 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_864812 |
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| Protein GI | 117924195 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.178537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.435541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGTAA GTCAAAAGCA GGCCGGGGTT GCTCATAAAG CGAAAGAGCA AAGCTTACGC
ATGATCAAGA CCCTGCTGGA AAATAGCCAT GAGGGCATCC TCATTTTGGA TGCTCGGGGC
ACCGTGCATC AAGCCAACCA AGCCTTTATG AACATGACAG GCATGAAAAA AGGCTCGCTG
GTGGGGCGCC ATATCCTGCG CTTAATGCCC GAGGAGTTCC GAGAGCGCCT GCTCGAAGAG
ATTCGTGAAG AGCTGTGGCA AAGCGGGTTT TGGCAGGGTA GCCTCTCCCA GTCGCTCGGG
GATGACAAAC AGTTGACCGT GGATTTAAAA GTCAGTGCGG TGCTGCCCCC AGATGGGAAG
GTAAGCTACT ATATCGCCCA GTTGCGGGGC AGTTCGGTGG TCTCTAGCCC ACCCCCGCCA
AAGGATAATC GTGACGACCT TACCGGTCTA CCTAGCCGTA TTCTGTTTGA AGACCGCTTG
CAGCAGGCCA TCTCCCTGGC GGTGCGCCAC AAAAATTGTG TGGGTGCCAT GTTCTTGGGT
TTGGACACCG AACGCATTAA GCTGATCCGT AACTCCCTTG GCCAAACCGC CACCGATGAG
CTGATTCGTG AAGTGGCCGT ACGTTTGGAT GATTGCTTGC GTACCACCGA CTCCGTTGCG
CGCATTGCTG AGGATAGCTT TGCCCTGCTG CTTACCGACC TGAATGGTCA TAAAGATGCG
GTGCGTAACT CGTCGGTGGT GGCGCGTAAG GTGTATGAGT CACTGGTGAA GCCGGTCATT
CTCAACGGTC AGCCTGTGGA GGTCAATGCC GCCATGGGGA TCACCCTGTT CCCCCAGGAT
GGTTCAACCC CCCGCGAGCT GTTGATGAAT GCAGAAACCG CCCTTAACCA TGCTCGCCAT
CGGGGCTGGA ATAACTATCA GTTTTTCTCG TCGGAGATGA CCGAGGCCGC CAGAGAGCGC
TTTGAGCTAG AGACGCACCT GCGCCAAGCT ATTGAAAAGA ATGAACTGGT TCTCTATTAC
CAACCCCAGG TCGATCTGCA TGATGGCACC ATCATCGGGG CAGAGGCGCT GATCCGCTGG
AAGCACCCCG AGCGGGGTTT GATCAGTCCG GCTCAATTTA TTCCCGTTGC GGAAGAGACC
GGCTTAATCG TGCCCATTGG TGAGTGGGTG ATGCGCACCG CCATTCGCCA AATCGCCATT
TGGAAAGAGC TGGGGGTAAC GCCGGTACGG GTGGGTATTA ACCTTTCGGC CTTACAGTTT
AAGCGGCAAA ATTTAGCGGC CTTGGTTGAA GAGTTGCTGA ATGAGCATGA TATTGACCCC
TCTTTGGTGG ATCTGGAGAT TACCGAAAGT GCCATTATGG ATGATGTGGG GCGGGCCATT
GAGATGCTCA AACGCATCAG TGCGCTGGGG GTTAAACTCT CCATTGACGA TTTTGGTACC
GGATATTCAT CCCTGAGTCA ACTGCGCCAG TTTCCTTTCC AAACCCTTAA AATTGATCGC
TCGTTTGTGA CCGATCTGGA GAGCAGTGGC GATAAAGCCA TTGTGAGCGC CATTATTGCC
ATGGCCCATA GCTTGGAGCA GACGGTGATT GTGGAGGGGT TGGAAACATC CGCTCAGCTC
ACCATTATGA AAGAGCTTAA TTGTAATGAA ATGCAGGGCT TTTTGTTCAG TAAGCCACTG
CCTGCCGAAG AGTTTACCGC GCTGCTGCGT GAGGGGCGTC GGCTCGAAGG CTAA
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| Protein sequence | MKVSQKQAGV AHKAKEQSLR MIKTLLENSH EGILILDARG TVHQANQAFM NMTGMKKGSL
VGRHILRLMP EEFRERLLEE IREELWQSGF WQGSLSQSLG DDKQLTVDLK VSAVLPPDGK
VSYYIAQLRG SSVVSSPPPP KDNRDDLTGL PSRILFEDRL QQAISLAVRH KNCVGAMFLG
LDTERIKLIR NSLGQTATDE LIREVAVRLD DCLRTTDSVA RIAEDSFALL LTDLNGHKDA
VRNSSVVARK VYESLVKPVI LNGQPVEVNA AMGITLFPQD GSTPRELLMN AETALNHARH
RGWNNYQFFS SEMTEAARER FELETHLRQA IEKNELVLYY QPQVDLHDGT IIGAEALIRW
KHPERGLISP AQFIPVAEET GLIVPIGEWV MRTAIRQIAI WKELGVTPVR VGINLSALQF
KRQNLAALVE ELLNEHDIDP SLVDLEITES AIMDDVGRAI EMLKRISALG VKLSIDDFGT
GYSSLSQLRQ FPFQTLKIDR SFVTDLESSG DKAIVSAIIA MAHSLEQTVI VEGLETSAQL
TIMKELNCNE MQGFLFSKPL PAEEFTALLR EGRRLEG
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