| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0847 |
|---|
| Symbol | |
|---|
| ID | 4481054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1055769 |
|---|
| End bp | 1056413 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639721595 |
|---|
| Product | 50S ribosomal protein L3P |
|---|
| Protein accession | YP_864772 |
|---|
| Protein GI | 117924155 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000479377 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000116579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGTG GTCTAATTGG CCGTAAGCTC GGCATGTCCC AGATGTTTAC TGAGGATGGG
CAGCGTATCC CTGTCACCCT TGTACAACTG GGTCCCTGTG CTGTAGTGGC TAAACGTAGT
GACGAGCAAG ACGGCTATAA CGCGGTTCAG CTCGGTTTTG AAGAAGCCAA ACCCTCTCGC
CTCTCCAAAA CTGTCCGTGG ACAGTATGCC AAGGCTAATG TGACGCCTCG GCGGGTGCTG
CGTGAATTTC GCGTCTCCAA TCCAGAATCT TATGAAGTTG GCCAAGAGTT GACTGCGGAG
CAGTTTGCGG TGGACAGCTT TGTGGATGTG ACGGGTAAGA CGGTGGGTAA AGGTTTCGCT
GGTGTTATGA AGCGCTGGGG TTTCCGCGGT GGTCGTGCAT CCCACGGTGC CCATAAAGTG
CATCGCTCCG GTGGTTCTAT CGGTCAGTGT CAAACCCCTG GCCGTGTTTA TAAAAATAAG
AAGATGGCCG GTCATATGGG TCAACAGACC CGTACGGTAC AAAATCTTAA GGTCGCATAT
GTGGACGCAG TACAGTCCAT TATTGCGGTA AAAGGGAGCA TTCCCGGTTC CAAGGGCTCT
CTGGTGTTGG TACGGGACGC CTTGAAAAAA GGCTCTGCCG AATAA
|
|---|
| Protein sequence | MRSGLIGRKL GMSQMFTEDG QRIPVTLVQL GPCAVVAKRS DEQDGYNAVQ LGFEEAKPSR
LSKTVRGQYA KANVTPRRVL REFRVSNPES YEVGQELTAE QFAVDSFVDV TGKTVGKGFA
GVMKRWGFRG GRASHGAHKV HRSGGSIGQC QTPGRVYKNK KMAGHMGQQT RTVQNLKVAY
VDAVQSIIAV KGSIPGSKGS LVLVRDALKK GSAE
|
|---|
| |