| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0841 |
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| Symbol | |
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| ID | 4483421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1046510 |
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| End bp | 1050748 |
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| Gene Length | 4239 bp |
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| Protein Length | 1412 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639721589 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_864766 |
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| Protein GI | 117924149 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00107852 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACCGG TTAGCGATGC GCCTGCAACA CCTAGCTCGG AAATTTCTGC GGCTGGGCAG
AGCGTTTTTA AGCTGTTCTC CCGGCCTATG CTGGGGCAGA GCTTCGATGG TATCCGTATC
TCGATTGCTT CACCTGAGAA GATTCGTTCT TGGTCTTTTG GCGAAGTAAA AAAGCCAGAG
ACCATCAACT ATCGTACCTT TAAGCCGGAG CGCGATGGTC TTTTTTGTGC CAAAATCTTT
GGCCCCGTAA AAGATTATGA GTGTCTGTGT GGCAAGTATA AGCGTCTCAA ACACCGTGGT
GTGGTGTGTG AAAAGTGCGG CGTTGAGGTG ATCCAATCCA AAGTGCGCCG TGAGCGCATG
GGTCACATTG AACTGGCCGC GCCTGTGGCG CACATCTGGT TCCTCAAATC CCTGCCCAGC
CGGATTGGTC TGCTGTTGGA TATGACCTTG AAGGATCTGG AGCGGGTTCT CTACTTTGAG
AACTTTGTGG TACTAGAGAG TGGCATGACC CCCATGAAGC GCGGGGAGCT GCTGACCGAA
GACCGCTACT ACCAGCTTAT AGAAGAGTTT GGTGACGAGT TCCGCGCCGG TATTGGTGCC
GAAGCCATCC GCGAAATGTT GGTGGATCTC AAAATACCCG AAGAGATCAA TCAACTGCGG
GACGAACTGC GTGATACCAG TTCCGAAGCG CGTCGTAAAA AGATTGTCAA ACGGTTGCAT
ACCCTGGAGG CCTTTCAGGA TTCCAAAAAC TCACCTGAGT GGATGATTTT GGAGGTGATT
CCGGTTATCC CCCCCGAGCT GCGCCCCTTG GTGCCGCTGG ATGGTGGGCG TTTTGCGACC
TCCGATTTGA ACGATCTCTA CCGTCGCGTG ATCAACCGTA ACAACCGCCT CAAGCGCCTG
TTTGAGCTCA AGGCACCGGA TATTATCATC CGCAATGAAA AGCGTATGTT GCAGGAGTCA
GTGGACGCCC TGTTTGATAA TGGTCGTCGT GGTCGTGTGA TTACCGGCAC CAATAAGCGA
CCGCTGAAAT CCTTATCCGA GATGCTCAAG GGTAAGCAGG GCCGTTTCCG CTTGAACTTG
CTGGGTAAGC GGGTCGACTA TTCGGGTCGT TCCGTGATCG TGGTGGGTCC TGAGCTTAAA
TTGCACGAGT GCGGCTTGCC CAAAAAGATG GCGCTGGAAC TGTTCAAACC CTTCATCTAC
AACCGTCTCG AAGAGCGTGG CCTAGCCACC ACCATCAAGG CGGCCAAGCG TATGGTGGAA
AAAGAGAAGG GGGAAGTGTG GGATATTTTG GAAGAGGTGA TCCGGGAACA CCCGGTTATG
CTCAACCGCG CACCCACCCT GCACCGTTTG GGTATTCAAG CCTTTGAACC TAAACTGGTG
GAAGGCAAGG CCATTCAGTT GCACCCGCTG GTGTGTACCG CTTTTAACGC CGACTTTGAC
GGTGACCAAA TGGCGGTACA CGTGCCCCTC TCCATTGAGG CACAAATTGA AGCGCGGGTG
TTGATGATGT CCACCAACAA CATCCTCTCT CCCGCCAACG GTAAGCCGAT TATTGTGCCG
ACGCAGGATA TCATTCTGGG TCTCTACTAT ATGACCTCAG AGCGGGCCAA TGTGGCTGGC
GAGGGTATGA TCTTCAGCAA TACGATGGAG GTTAAACAGG CCTTTGATGC TGGGGTTGCT
AACCTGCATG CTTCCATCCA GTGTCGTTTC CGGGGTAAGC GGGTGCATAC CACGGTGGGT
CGTATGTTGT TGGCCGATAT GCTGCCAGAA CGGATTGATT TCCAGGCGAT TAACAAGCTT
ATCACCAAAA AAGAGGTGAC CAAGCTGATC GACCATACCT ACCGTATGTG TGGTACTAAA
GATACGGTAA TCTTTACCGA TCGTCTGATG GCTATGGGCT TTGCCTTCGC CTGTCGGGCC
GGTATCTCTT TCGGTAAAGA TGACATGGTT ATTCCTGAAG CCAAGCGTAA GTTGGTCGAC
GCTGCCCAGG AGAAGGTGAA AGAGATTGAA AAGCAGTACA CTGACGGTCT GATCACCGAG
GGTGAAAAAT ATAACAAGGT GGTGGATATC TGGTCGCACT GCACGGAGCG GGTGGCCGAT
GAGATGATGG GTACCATCTC TACCGATACG GTCTTGAACA AAGATGGCGA AATGGTGGAG
CAACCCTCCT TTAACTCCAT CTTTATGATG GCCAACTCCG GCGCCCGGGG TTCAGCCGCG
CAGATGCGTC AGTTGGCGGG TATGCGTGGT CTGATGGCAA AACCATCGGG TGAGATCATG
GAGACCCCCA TCACGGCAAA CTTCCGTGAG GGGTTGACGG TTCTTCAGTA CTTTATCTCT
ACCCACGGTG CCCGTAAGGG TCTGGCCGAT ACCGCTTTGA AGACGGCCAA CTCCGGTTAT
CTAACCCGCC GTTTGGTGGA CGTGGCGCAG GATTGTATTG TCCGTGAAGA GGATTGCGGT
ACCTCTATCG GCATCACCGT GGCGGCACTG GTGGAAGGTA ATGATGTGGT AGAAACCCTG
GGCGACCGTC TGTTGGGTCG TACCCCGGTG AGTGATATCA AGGATCCCAT CACCGATGAG
CTGCTGGTTA AAGCAGGCAC CATCATGGAT GAGGATATCG TTGAGAAGAT CGAAAACTCC
AATGTGGACT CGGTGCTGAT TCGTTCACCA CTAACCTGCG AGACCACTCG CGGCGTTTGT
GTCACCTGCT ATGGTCGTGA TCTGGCGCGT GGTACCCGCG TGACGGTAGG TGAAGCGGTT
GGGGTGATCG CGGCACAATC TATTGGTGAG CCCGGTACCC AGTTGACCAT GCGTACCTTC
CACATCGGTG GTACGGCATC CCGTCAAGCG GAACAGTCTC ACCAAGAGAC CACCCATGGT
GGTGTGCTCA AGTTTCATGA CCTGATTACG GTGCAGGATC GTGCGGGTCG GTATGTGGTG
CTCTCTCGCA ACAGTGAGGT CTCTTTACAC GAAGCGGTTG AGCATGAGGG TCAGGTTGAA
GCGGGTCGTG AGCGCGAGCG TTACCGTATT CCCTACGGCG CGCGTATCTC TAGTGCACCG
GGCTCGGTGG TGGAGAAGGG CACGACCTTT GCTGAGTGGG ATCCCTTCGC CATGCCCATT
ATCACGGAGG TAGAGGGGAT CGTTAAGTTT GGCGATCTGG TGGATGGTGT CTCCTTGCGG
GAAAACATGG ATGATACCAC CGGCTTGATC TCCAAAGAGG TGACAGAGTG GAAGGGTCAA
AGCTCCAAGA AGGGTGATAT GCGTCCCCGT ATTACCCTGA AGGATGTGAA CAGCAATGAG
ACGCTGATGA TGCCCAATGG TAGCGAATGC CGCTATTATC TGCCGGTTGG CGCCGTGATT
GTCGTCAACG AGGGGGATCA TGTACATGGC GGTGATATCA TTGCTAAGGT GTTGCGTCAG
TCGACTAAAA ACCGCGACAT TACTGGTGGT TTGCCACGGG TCGTGGAGCT GTTTGAGGCC
CGTAAGCCTA AAGAGCACTC CTTCATTGCG GAAAATGAGG GTATGGTCAC CTATGGTAAG
GATCTCAAAG GTAAGCGTCG TTTGGTGGTG ACACCCGATA GTGGCGAGCC TATGGAGTAT
CTGTTGCCTA AGGGTAAGCA GCTTGCGGTG AACGAGGGCG ACTGGGTGCG TAAGGGCGAA
CCCTTGATGG AGGGCTCACC GGTACCTCAG GACATTCTCA AGGTGTTGGG CTTGGAAGAG
TTGTGCCGCT TTATGGTCAA CGAAATTCAA GAGGTCTACC GGTTGCAAGG TGTGCGTATC
AACGATAAGC ACATTGAGGT GATCGTTCGC CAAATGTTGC AGAAGGTGCA GATTACCGAT
CCGGGTGACA CCATGTTTGT CAGTGGTGAG CAGGTAGAAA AAGATGACTA CCTGTTGGAG
AACGTCAAGA CCGATAAGCG CGGTGGTCGT GTGGCGACCT GTACACCGCT ACTGCTGGGC
ATTACCAAGG CCTCGCTCTC TACCCCTTCT TTCATCTCGG CGGCCTCCTT CCAGGAGACC
ACACGGGTGC TGACTGAAGC GGCGATCTCC GGTCGTGTGG ATACCCTCAA TGGCTTAAAA
GAGAATGTCA TTGTGGGACG TCTGATCCCT GCTGGTACGG GGAATATTTT GTCGCAGTTG
AAAAAGATGG GCAGTTTGAC CAAAGGAGAA AAATCTACTC AAGGTGGCGA GCAACACGTT
GCCAAGGTAG CCAGCTCCAG TGAAGTTACT GAAGGATAA
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| Protein sequence | MTPVSDAPAT PSSEISAAGQ SVFKLFSRPM LGQSFDGIRI SIASPEKIRS WSFGEVKKPE
TINYRTFKPE RDGLFCAKIF GPVKDYECLC GKYKRLKHRG VVCEKCGVEV IQSKVRRERM
GHIELAAPVA HIWFLKSLPS RIGLLLDMTL KDLERVLYFE NFVVLESGMT PMKRGELLTE
DRYYQLIEEF GDEFRAGIGA EAIREMLVDL KIPEEINQLR DELRDTSSEA RRKKIVKRLH
TLEAFQDSKN SPEWMILEVI PVIPPELRPL VPLDGGRFAT SDLNDLYRRV INRNNRLKRL
FELKAPDIII RNEKRMLQES VDALFDNGRR GRVITGTNKR PLKSLSEMLK GKQGRFRLNL
LGKRVDYSGR SVIVVGPELK LHECGLPKKM ALELFKPFIY NRLEERGLAT TIKAAKRMVE
KEKGEVWDIL EEVIREHPVM LNRAPTLHRL GIQAFEPKLV EGKAIQLHPL VCTAFNADFD
GDQMAVHVPL SIEAQIEARV LMMSTNNILS PANGKPIIVP TQDIILGLYY MTSERANVAG
EGMIFSNTME VKQAFDAGVA NLHASIQCRF RGKRVHTTVG RMLLADMLPE RIDFQAINKL
ITKKEVTKLI DHTYRMCGTK DTVIFTDRLM AMGFAFACRA GISFGKDDMV IPEAKRKLVD
AAQEKVKEIE KQYTDGLITE GEKYNKVVDI WSHCTERVAD EMMGTISTDT VLNKDGEMVE
QPSFNSIFMM ANSGARGSAA QMRQLAGMRG LMAKPSGEIM ETPITANFRE GLTVLQYFIS
THGARKGLAD TALKTANSGY LTRRLVDVAQ DCIVREEDCG TSIGITVAAL VEGNDVVETL
GDRLLGRTPV SDIKDPITDE LLVKAGTIMD EDIVEKIENS NVDSVLIRSP LTCETTRGVC
VTCYGRDLAR GTRVTVGEAV GVIAAQSIGE PGTQLTMRTF HIGGTASRQA EQSHQETTHG
GVLKFHDLIT VQDRAGRYVV LSRNSEVSLH EAVEHEGQVE AGRERERYRI PYGARISSAP
GSVVEKGTTF AEWDPFAMPI ITEVEGIVKF GDLVDGVSLR ENMDDTTGLI SKEVTEWKGQ
SSKKGDMRPR ITLKDVNSNE TLMMPNGSEC RYYLPVGAVI VVNEGDHVHG GDIIAKVLRQ
STKNRDITGG LPRVVELFEA RKPKEHSFIA ENEGMVTYGK DLKGKRRLVV TPDSGEPMEY
LLPKGKQLAV NEGDWVRKGE PLMEGSPVPQ DILKVLGLEE LCRFMVNEIQ EVYRLQGVRI
NDKHIEVIVR QMLQKVQITD PGDTMFVSGE QVEKDDYLLE NVKTDKRGGR VATCTPLLLG
ITKASLSTPS FISAASFQET TRVLTEAAIS GRVDTLNGLK ENVIVGRLIP AGTGNILSQL
KKMGSLTKGE KSTQGGEQHV AKVASSSEVT EG
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