Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0817 |
Symbol | |
ID | 4480853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1020003 |
End bp | 1021787 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639721560 |
Product | TPR repeat-containing protein |
Protein accession | YP_864742 |
Protein GI | 117924125 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.02661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCATCAAC AGACCCTGCG ATTGGTACAT GCCGTGAAAA AAAATCGGTT TAAAACGATC AAAGCCATCA GCTCCCTCGT GGTACTGGGG TTGGTTGGAT GTACATGGGC GGTGGAGAGC GGGCTCAATC AGAGTCGTGC AGAAACTGCG GCGGCTACCA CTAAGGAGCC CCACATCTTT ACCCCAGAGG AGCGGTTGGC CGATGCCACC GCGACCTTTA GCTTTTTAGT GGGGCACCTG CTGCTGCAAG AGCGTGATTG GAAAGGGGCC GAAGCCGCCT TTACCCAGGT AGTGGAGAGC GATCCTGGTG CGGTGGAGTC ACAGGTGATG GTGGCGCGCC TCGCGATGCA GGGCAAGGAT TATGAAAAAG CCCTGGTGCA TGCTCGTAAG GTGGTGGATC TGGCCCCAGA GCATGAGCTG GCGCGACGTA CGTTGGCGAC CATCCTGCGG GTGCTTAAAC GCTATCCCGA GGCGGTGGTG CAGTATGAGG AGCTGCTTAA ACAGGATCCT GACGACAGTG GTGTGCGACT GGTGTTGGCG CAGCTTTATG GGCGTATTGG GCGTGCGGCT GAGTCCAGCA AAGTGGTGGA GGCGCTGCTT AGCCATCCCT TGATTGGCTG GCGTGCGGAG CTGGCTGTTG GTCGGGGCTG GCTGCACCAA GATGATCAAG CGCAGGCGTT GGCGGCTTTT GAACGCGCCC GCGCCATGGC CCCAGAGCAG TTGGAGCCCA CCTTGGCGCT GGGCTCCGTA TTGCAGGATT TGAAAAAAAA TGAAGAGGCC GAGGCGATCT ATCGGCGCTA TTTGGATGAG CATCCCCGCA GTGAGGTGGT GCATACCCGC TTGGGCCGTC TGTTGTTGAA TGTGGACGAC CGCGAAGGGG CGCTGGCGGT CTTTAGTAAC TTGCAAAGGT TGGCCCCATC CAGTGTACAG GCTCACCTGA GCAGTGCCTT TATTCTACTC TCGCAAGAGC GCTACGAAGA GGCGCTGGGT GCCTTGCGGC TGGCCGAGGT GCAGCAACCC GAAAATTCTA GCATCCGCTA CTACCTAGGG CAGGCTCTGG AGTATTTAAA GCGGGATGAA GAGGCGGTTG GTGAGTATGC CAAGGTGCAG TTGGGCGAGA CCTTCTATCC CGAGTCGCAG ATTCGCATCG CCTATTTGCA GTCGGATCTT GGGCGTAAAA AAGAGGGGGT AGAGATTGTT GAAAGCCTCT ATAAGAGCCA TCCCACACGG GTGGATGTGG TGTTGGCGCT TAATTTTTTG CAGCTACAAA ACGATCAATA TGAGCAGGTG ATTCAGTCTA CGGAGGAGGG GTTAAAGTTA GATCCCGAGG AGTCCCGTTT TCTATTTAAC CGTGCCATGG CCTACGACAA GCTGGGTAAG TGGAAAGAGG CTGAAGCCGA TTTGGAAGCC TACATTAAGG TTAATCCCAA TGACGCTCAT GCACTGAACT ATCTCGGTTA TACCTGGGCA GACCGCAATG AGAATTTGGA AGGCTCGCTG GAGCTGTTAA AAAAGGCCGC CAAGTTGGCA CCCGGGGATG GTTTTATTAC CGACAGTCTG GGCTGGGTGC TGTTTCGCAT GAACCGTCTC TCTGAGTCGG TGGACGCCAT GCGTGAGGCC GTGCGCTTGC AGCCCGATGA TGCTACCATC GTTGAACATC TGGGGGATGT GTTAAAGGCT TTGGGTCGTG ATAAAGAGGC GGCGAACTTT TGGCAAAAAT ATCTCAAGAT CAGTCCAGAT AATGCGAATC TCAAGGAGAA GTTACGCCAG CTTAACTTGC CATAA
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Protein sequence | MHQQTLRLVH AVKKNRFKTI KAISSLVVLG LVGCTWAVES GLNQSRAETA AATTKEPHIF TPEERLADAT ATFSFLVGHL LLQERDWKGA EAAFTQVVES DPGAVESQVM VARLAMQGKD YEKALVHARK VVDLAPEHEL ARRTLATILR VLKRYPEAVV QYEELLKQDP DDSGVRLVLA QLYGRIGRAA ESSKVVEALL SHPLIGWRAE LAVGRGWLHQ DDQAQALAAF ERARAMAPEQ LEPTLALGSV LQDLKKNEEA EAIYRRYLDE HPRSEVVHTR LGRLLLNVDD REGALAVFSN LQRLAPSSVQ AHLSSAFILL SQERYEEALG ALRLAEVQQP ENSSIRYYLG QALEYLKRDE EAVGEYAKVQ LGETFYPESQ IRIAYLQSDL GRKKEGVEIV ESLYKSHPTR VDVVLALNFL QLQNDQYEQV IQSTEEGLKL DPEESRFLFN RAMAYDKLGK WKEAEADLEA YIKVNPNDAH ALNYLGYTWA DRNENLEGSL ELLKKAAKLA PGDGFITDSL GWVLFRMNRL SESVDAMREA VRLQPDDATI VEHLGDVLKA LGRDKEAANF WQKYLKISPD NANLKEKLRQ LNLP
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