| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0779 |
|---|
| Symbol | |
|---|
| ID | 4484070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 962203 |
|---|
| End bp | 964446 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639721523 |
|---|
| Product | polypeptide-transport-associated domain-containing protein |
|---|
| Protein accession | YP_864706 |
|---|
| Protein GI | 117924089 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000230796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.181114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCCAAG CTGGTTTCGC CCAATTTGTA AAAAAATGTG TGGTGGGAGG TTTGGTGATC
AGCGCATCGA GTCTATGGGT GACGCAGGCC CATGCCTTGT CCGATCCTGT GCAAAGCCTC
TCCATGGTGG AGCGGGTTAT GGATGAGGAC GGCTTGCCCC GTGCGTTTGA TCTCACTCTG
CACGGTATTG ATTACAATAA AGAGAGCTAC GTGTGGTCAA TCTCTGCGCA GGGTGCCCAT
GGTAAGGCCA GCGTGGTGCA AAATGGCTCT GCGGTTAAGG TGGATTATCA GCCAGAGCCC
AACTGGCACG GCAACGATGA ATTTACCGTG CAGCTTGCCG ATGGTCGGGG TGGGGCGAGT
GAGGTGTTGG TCAAGGTGGT GGTGGAACCC ACCAACGATG CTCCGGTAAA TAAAAAGCCT
CCGCAGATTA TTGGGCATGC GATTATTGGC AGTATCCTGA CCGCGCGCAT GGGGGAGTGG
GATGATAGTA TTGACGGGGA AAAGGGCGAT TTTTTCTACT CCTATCAGTG GATGCGCGCA
AAAGATGCCA ACAGTACCGA GTTGGCCGAT ATGGTTGCCA TCGAGGGGGC AACCGAGCAG
ACCTATCAGG TAACAAAGGC CGATAACCAT CTTTATCTGG CGGTGGAAGT GACGGCCCAT
GATCGCAGCA GTGGCGAATC GGTCCCCTTA CAGACCTCGG CGATGAGCCT GCCTGACAAG
GTGGGTAACT ATGCCCCGGT GATTGGTCTG GCCCCCCTGA AAGAGCTGGA AGAGACTTTT
TTGGTTAAAG CGTTTGAGTT TGTGGGCAAT AAAAGTTTCA CCACCGAAGA GCTCAATAAT
GCCTTGGCCG ATTACACCGA CCGCGAGCTT GGCATAACCA AGCTCAAGGA GGTTACCGCC
GAGGTGACCA AATTTTACCG CCAAAAAGAG AGTATTCTGG CCAGCGCCTA TCTGCCAAAA
CAGGAGATTG GCAACGGTAC CGTCAAGATT AAGATTGTTG AGGCCGAGGT CGACCAGATT
ACCGTGGCCG GTAACAAATC TTACAATGCA TCCTACCTGA AGAAAATCAT GGAGAAAGCG
GCCCGTAATT CTCCTCTTAA AAGTGATGAT ATCGAGCGTG GTTTGCTGAC CCTTAACACC
TTGCCGGCAC TCTCGGCCCG CTCCGTCTTG CAAAAAGGTG GAAAACCCGG TACGGCCAGT
GTCAATGTGC AGGTGGAGGA GAGCAAGCCC TTTGGTGTGA GCGTGGAATA TAACAACCAC
GGCTCGACAT CGGTCAGCCG TGAACGTTAT CAAACCACTT TGAGTTGGGA CAATATTATG
GGCTCGGGTG CCCAAGCCAC GGCAGCTGTG CTGGTGGGGG AAACGCCCAA AGATCTGGCC
TATAAAACCC TGGATATACA GGCACCCGTT GGCTACTACG GTACCAAGTT GGGGGTCTCT
TATAGCACGG GTAACTATGA CGTCACGCAG GTCTTCTCTG ACTTGGGCAT CAAAGGTGAG
AGTACCACAG GTAAAATCTA TGTGCAGCAC CCCTTTGTGC TGCGGCGTAA CCTCTCTCTG
TATGGGGAGG TGGGTGTGGA AGGTAAGAAC GCGCCCTTCT ACCTGTTAGG GACGCTTAAC
AGCAAAGACC GGGTGCGCAT TGCCTACGCC CAGGTGGACA GCACCTTTGA TCTGCTCGGG
GGTAGCAATA CCATCTCGGC AAATGTAACC CAGGGTTTGG GGGCGATGTT AGGGGGTAGT
CCAAACGGGA CAAAAACCAG CCGTACCGGT GCGGATAACC AATTCTCTCG TTTGCAACTG
ACCTATGCCC ATAACCGTCA GCTTCATGAA AAATATAGCT TTTATGGTAC GGGAACGTGG
CAGGCTGCCG ATGATAGCTT GGTTTCGAGC GAAGAGTTTC AAATTGGTGG TCAGGACTCC
GTACGGGGGC ATACCTCTGG TGCTGAGAGT GGCGATAATG GTTACCGAAC CAGCTTTGAG
CTCCGTTACA CCGATCCTGC CGCCACCGTT CCATATATGA TCTACAGCTT CTTGGATCAT
GGCTATGTAC GACGTAAAGA GCCCTTGATC AACCAGGAGA AGTCGGCCTT TCTTACCGGC
TATGGTGTTG GTGCCATGCT CAACTACACC AAGTTTGGTG TGACAGGTTC CATGAATCTG
GATATGGGGT GGCCCATTTA TCCCGCAGTT AACACCCTGA AAGAGAGCCC TGTTGTAAGT
CTCTCTACCT CGATCACCTA TTAA
|
|---|
| Protein sequence | MRQAGFAQFV KKCVVGGLVI SASSLWVTQA HALSDPVQSL SMVERVMDED GLPRAFDLTL
HGIDYNKESY VWSISAQGAH GKASVVQNGS AVKVDYQPEP NWHGNDEFTV QLADGRGGAS
EVLVKVVVEP TNDAPVNKKP PQIIGHAIIG SILTARMGEW DDSIDGEKGD FFYSYQWMRA
KDANSTELAD MVAIEGATEQ TYQVTKADNH LYLAVEVTAH DRSSGESVPL QTSAMSLPDK
VGNYAPVIGL APLKELEETF LVKAFEFVGN KSFTTEELNN ALADYTDREL GITKLKEVTA
EVTKFYRQKE SILASAYLPK QEIGNGTVKI KIVEAEVDQI TVAGNKSYNA SYLKKIMEKA
ARNSPLKSDD IERGLLTLNT LPALSARSVL QKGGKPGTAS VNVQVEESKP FGVSVEYNNH
GSTSVSRERY QTTLSWDNIM GSGAQATAAV LVGETPKDLA YKTLDIQAPV GYYGTKLGVS
YSTGNYDVTQ VFSDLGIKGE STTGKIYVQH PFVLRRNLSL YGEVGVEGKN APFYLLGTLN
SKDRVRIAYA QVDSTFDLLG GSNTISANVT QGLGAMLGGS PNGTKTSRTG ADNQFSRLQL
TYAHNRQLHE KYSFYGTGTW QAADDSLVSS EEFQIGGQDS VRGHTSGAES GDNGYRTSFE
LRYTDPAATV PYMIYSFLDH GYVRRKEPLI NQEKSAFLTG YGVGAMLNYT KFGVTGSMNL
DMGWPIYPAV NTLKESPVVS LSTSITY
|
|---|
| |