| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0494 |
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| Symbol | |
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| ID | 4482406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 593978 |
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| End bp | 597244 |
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| Gene Length | 3267 bp |
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| Protein Length | 1088 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639721241 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_864425 |
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| Protein GI | 117923808 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATAA TCCTACCATT TGGCTCAACA CCACAGCCAT CCCAGACCCC GCCATCAGAG
CAAAAGCCCC GTCAAGGCTC TAGCCGCTGG GTTAAAGTAC TCGGGGGAGG AATGATCGGT
TTTTTTTTAT TGGGCAGCCT CTCCTTCAAC TATTTGGATG GCTGGGGCAG CCTACCCATT
ACCGGTGGCT TGGGCCTGAT AATCGGTGCA TATACCCTAT GGTTCTGGAC CCAACCGTGG
CAGGTTAAAC TGTTGGGTCG ACTCATAACT ATCTTTATTT CAGCTGTATT ACTGGTATTA
AGCTCACTGT TCTACAACCC ATTTTGGGAG CTTGTGCCAC AACGGTTGAA CATCATAAAT
CTTGGTAGAC CAACTGCCAT TAATTTGAGT TATGCCATTA TTATTTTAAT GTTTATTGTG
GCAATCATTC TAGCTCTCAT CCACGCCAAG TCGAGAGAGG ATTCTACAGA AGTTATTCCT
GCACAAAGTC AAAAACGTTA TCAACATGTT TTTATAGATT TAAATTATAT TGTAGTCTTG
CTTTTAGGCT TTATGGCGTT TCTTGTTTTT ATGGCTATGA CACCACCCAA GACACCCTCT
ACGCCATCCC ACACACCAGT CAGTGGTTCC ATAGCATTAT TAGAAACGGC CCTACGCCCC
CCTGCGCCTG CCCCCTCATT TACTGGACGG CAAGGTGAAC TCAAACAGTT GAAAGAGCAT
TTACTCAGCC CAACCGGCGC GACCGTGGGT ATGGTGGTAC TCACAGGGGA AGGCGGGGTT
GGTAAAAGTC AGATCGCCAA AAAGTTTGCC CAAGAGCATC AAAAGCACTT TGAGAAAATA
GTTTGGCTGC CTTCGGAAAA TCGCAGTCAA ATTCAAAAAA ACCTGCTCCA ATTGGCCGAT
CTGCTGGGGC TCCCCCCTTT ATCGGACTCT TTACGTGTGC GACAGGTCGT TAGCATACTC
TCTGCACAAG GGGGGTGGCT GCTTATTTAT GACAATGCCG ATGATGGGCC TAGTCAACTG
GAGGGGCTGT TACCCAGCAC CGCCATGGGT GGGCGCATTC TTATAACCAG CCGCAATCCA
AACTGGGGCC AGTTGCAAAT CCCAACACTA GAGGTTAAGA CTTTTGCAAC CCAAGTTTCT
GTGCGTTTTT TAAACAAACT CACCAGCCGA AAAGGTGACG ATGACACCGC TGCCCAACTG
GCCGAATTCC TCGGCAATCT CCCCTTGGCG CTGGAACAGG CGGCCGCTTA TATCGAACAA
ACCGCTATCA GCTATAGAAA CTATCTATCC CTATTAAGGG GCGCTAACAC TCTACTGCCC
ATTCTTGAAA AAAAGACTGT ACCGCACAAC CACAATAGAC ACTCGATTGC CAGCACATGG
AAACTCTCAA TAGATAAACT AGCCGAGCAA CAGCAGCAAC CTGCCATTCA ACTACTCAAC
CTGTTGGCAT TTCTCAATCC TGATGGGATT CCTTTAACCC TGCTAAAACA GATACCCAAT
ACACAACCCC ATGACCCCTT GGCAAAGCTC CCTCAAAACT CGTTGGCGCT TAACGATGCG
GTTGCCGCAC TTCGCAGCTA CTCCCTGATT AAAGTAGAGA ATGAGGCACT AACCATACAC
CGTTTGCTAC AAGAGGTTAT CCGACATGAC ATGGATCAGG AAGCCAAAAC AGCCTGGGGT
AGTGCCACAG CGCGACTATT GAAGCCTATC TTTCTCTACG ACGTAAAAGA TTCTTCCACC
TATCCTGCGG CTCTACCCTG GCTACCTAAC CTTATGGCTT GGTTTAAACA GGCGCAGCGT
CTGGAGTTGC ATGATCCCAC CGCACTGGAT ATTATGGATC GTAGTGCATC CCTGCTCCGA
GCCATGGGCA ACTTGAAGGA AGCCAAGAGC ATGGCACAGA CCATACTGAC CCTTAAACAA
AAATATTTAG GGGCAGACGA CCTAAGTATC GCCCTTAGTG AAAACAATCT CGCCTCGGTG
CTCAAAACAA TGGGGGATCT AAACGGTGCC AAAGCGGGCT TCGAACGTGC CCTTATAATC
GACAAAAAAA ACTTCGGAGA TCAGCACCCT AACGTTGCCA ACAATCAACG CTATCTCGCC
CTGGTGCTCA AAGCAATGGG GGATCTAAAT GGTGCCAAGG AGATGTTAAA ACGCGCACTT
AAAATCTACA AAAATGCCTA CGGCGATCAT CGCAGTAATA TCGCTAGGGT TGAAAATGCC
CTCGCCGGGG TGCATCATAA CATGGGCGAT CTCAACGAAG CCAAGGCGGG CTATGAACGT
GCACTCACGA TAAGCACAGA AATTTTTGGC GATCGACACC CAGAGGTGTC AAGATATTAC
AATAACATTG CTTGGGTGCT CCAAGATATG GGGGATCTTA ATGAGGCGAA GAAGCTCTTC
GAACGTGCCC TCCAAATCAG CACTAAAAAC TATGGCGATC AGCACCCCAG CGTTGCCCTC
CGAGAAGACA ATATCGCCGG GGTGCTTAAA GAGATGGGGG ATCTCAACGG GGCCAAAGTA
CGCTTCGAAC GCGCTCTCCA AATCGACACT AAAGTATATG GCGATCAGCA CCCGAACGTC
GCTAGGGATG AAAGCAATCT TGCTAAGGTT CTCCAAAAGA TGGGGGATCT CAACGGAGCC
AAAGATCGCT TTGAACGCGC TCTTAAAATC GACACAGCAA TTTTCGGTGA TCAGCACTAT
AGAATTGCCA CTCGAGAAAA CAATCTCTCT GGGGTGCTCC GCGAGATGAA GGATCTCGAC
GGAGCTAAGG CGCGCATTGC ACGCGCCCTC CAAATCGACA CAGCAGTTTT CGGTGATCAA
TCTCATAAAG TTGCCAGAGA TCTAAATAAT CTTGCCTTGA TACGTAAAGA TATAGGAGAT
CTTGATGGGG CTAAGGCGAA CTTAGAGAAA GCGCTCAATA TCGACTCCAG AGTATACGGC
GAGCACCCTA ACATCGCTAG GGATGAAAAC AATCTCGCCT TGGTGCTCCA AGCAATGAGG
GATCTAAAAG GTGCTAAGGC GGGCTTCGAA CGCGCCCTTA AAATCGACAC AAGAATATAT
GGCAATCAGA ACCCGAAGGT GGCCATTCGA GAAAACAATC TCGCCGGGGT GCTCCAAGAT
TTGGGGGATC TAGAAGGGGC TAAAGCGGGC TTCGAGCGAG CGTTGAAAAT ATTGGACAAC
AGCTACGGGC CGGAAAATCC CCTCACCAAA AAAGTAAGGG CCAATCTTGA TAAACTGCTT
AAACAGATGG CCAGCCCAGC CCCCTAA
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| Protein sequence | MAIILPFGST PQPSQTPPSE QKPRQGSSRW VKVLGGGMIG FFLLGSLSFN YLDGWGSLPI
TGGLGLIIGA YTLWFWTQPW QVKLLGRLIT IFISAVLLVL SSLFYNPFWE LVPQRLNIIN
LGRPTAINLS YAIIILMFIV AIILALIHAK SREDSTEVIP AQSQKRYQHV FIDLNYIVVL
LLGFMAFLVF MAMTPPKTPS TPSHTPVSGS IALLETALRP PAPAPSFTGR QGELKQLKEH
LLSPTGATVG MVVLTGEGGV GKSQIAKKFA QEHQKHFEKI VWLPSENRSQ IQKNLLQLAD
LLGLPPLSDS LRVRQVVSIL SAQGGWLLIY DNADDGPSQL EGLLPSTAMG GRILITSRNP
NWGQLQIPTL EVKTFATQVS VRFLNKLTSR KGDDDTAAQL AEFLGNLPLA LEQAAAYIEQ
TAISYRNYLS LLRGANTLLP ILEKKTVPHN HNRHSIASTW KLSIDKLAEQ QQQPAIQLLN
LLAFLNPDGI PLTLLKQIPN TQPHDPLAKL PQNSLALNDA VAALRSYSLI KVENEALTIH
RLLQEVIRHD MDQEAKTAWG SATARLLKPI FLYDVKDSST YPAALPWLPN LMAWFKQAQR
LELHDPTALD IMDRSASLLR AMGNLKEAKS MAQTILTLKQ KYLGADDLSI ALSENNLASV
LKTMGDLNGA KAGFERALII DKKNFGDQHP NVANNQRYLA LVLKAMGDLN GAKEMLKRAL
KIYKNAYGDH RSNIARVENA LAGVHHNMGD LNEAKAGYER ALTISTEIFG DRHPEVSRYY
NNIAWVLQDM GDLNEAKKLF ERALQISTKN YGDQHPSVAL REDNIAGVLK EMGDLNGAKV
RFERALQIDT KVYGDQHPNV ARDESNLAKV LQKMGDLNGA KDRFERALKI DTAIFGDQHY
RIATRENNLS GVLREMKDLD GAKARIARAL QIDTAVFGDQ SHKVARDLNN LALIRKDIGD
LDGAKANLEK ALNIDSRVYG EHPNIARDEN NLALVLQAMR DLKGAKAGFE RALKIDTRIY
GNQNPKVAIR ENNLAGVLQD LGDLEGAKAG FERALKILDN SYGPENPLTK KVRANLDKLL
KQMASPAP
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