| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0317 |
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| Symbol | |
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| ID | 4481734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 365328 |
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| End bp | 371249 |
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| Gene Length | 5922 bp |
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| Protein Length | 1973 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639721066 |
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| Product | superfamily I DNA/RNA helicase |
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| Protein accession | YP_864250 |
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| Protein GI | 117923633 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACTT TAATTTTACA TGTGTCGGTT CAAGAAAAAA TCAATTTTGC CACTCAACAA
AATGCGGTCC CCATTTTACG TGAACTTAGC ATTGAAAATA TAGGCCAAGA GAGTGTAGCA
AATTTACGTT TAACTTTAAC CAGCAATCCA GTCTTTCTCG TTCGAAAAAC ATGGCATCTG
GATCAATTAG AACCGGGTTT GCGGTTGACA GTGAGTGACC GTGATATTCG TCTGGATGCA
GGGCTTTTAA TGAGTCTCCA CGAGTCGCTA CGCGGGGATC TCAGAGTGGA GCTCTATCAA
GACGATCTGC TACTAGTAGA GAAAAATATT GAAGTTGAAT TATTAGCACG CCATCAGTGG
GGTGGTAGCC AATTTATGCC TGAAATGTTG GCAGCATTTA TTGAACCAAA TGATACGTTT
ATTGCAGAAA TATTACGAAG TGCATCCAGC CTATTGCAAA AAAATGGCTT GGAGAGTGGT
CTTGATGGTT ATCAGAAAGA TTCCTCCGTG CGGGTAGGTG AGGTTGTTTC GGCCATTTGG
AGCGCCATCG CAGCCTTGGG TATCACTTAT GCGGAACCCC CAGCAAGCTT TGAACAGAAC
GGTCAAAAAA TCCGTTTGCC TAGCATCATT AAGCAAACTG GATTAGCCAC GTGTTTGGAT
CTCGCACTAT TGTTCGCTTC GGCCATGGAG CAAGCTGGGC TTAATAGTTT GATTATCATC
ACGCAAGATC ATGCCTTTCC AGGAGTTTGG TTAAAACCTC AAACATTTCC AACGGTTCTA
ATAAAAACTG CTTTAGACAT TCGGAAACGG TTTGACCTTC AAGAATTGTT GGTATTTGAA
TCAACATTTG CCACAAGCCG AACCAACCCA GTACCATTCC ACAAGGCGGT AAAAAAGGGT
AGAGCGCAGT TGGAAGAGCA TGGTCAGTTT TATATGGCTA TTGATGTGCA ACGTGCGCGG
ATGTATCAAA TTCGCCCTCT CTATTGGGAG GATCAATGTG CAAGCAAAGA TCAGCTCAAT
GTCGAGCAAG TCAGCAGCAT GGGCGTTGAT CTATTGGAAT TTTCAGATCA AGGGGTAATA
CCAGAGCAGG AGTCGTTAAA ACCTACGACA GCTTCTGGAC GCTTGGAGCT GTGGCAGAAA
AAACTACTGG ATCTATCACT GCGCAATAAA TTATTGAATT TTAAATTAAA TGGTTCCAGC
GCTCTTGTGC TTATCTGTCC AGATCCAGGC TTGTTGGAAG ATAAGTTAGC GCAAAAGATG
AAGTTGAGTA TAGAATCCCT ACCAGAGATG GGTTCATCCA ATAATGGGCG AGATGCCCAG
TTGCACACAC AACGTACAGG TGGTGGTTTA ATTGAAGAGT TCGTTACTAA AGCGCTAGAA
AAAAATCAGC TTTACGTACA AGAGGAGAAA GAGGCTCTCG ATAAAAGATT GACCTCTCTC
TTTCGTCGAT CCAAGGCTGA CCTAGATGAA GGGGGCGCTA ATACGCTGTA TTTAGCCTTA
GGATTTTTGA TCTGGTGGCG CAGCAATGAT CCAAACAAAA AATATTATGC TCCGTTGATT
TTGATTCCTG TAACCCTAGA GCGCAAAAGT ATTCAGTCTG GGGTGCGCAT GGTGTTACAT
GAAGATGAAC CCCGTTTTAA TACCACGCTT TTGCAGATGT TACGCCAAGA TTTTAGGTTA
GAAATTCCAG GATTAGAGGG GGAGCTGCCC ACCGATACCC ACGGAGTGGA TGTGCATGGA
ATTTGGCATA AAGTGCGGCA CCATGTACGA GACGTTGAGG GGTTTGAGGT GGTTGAGGAG
GTTGCTCTAA GTAATTTTTC TTTTGCAAAA TATTTAATGT GGAAAGATTT AGTCGATCGT
ACGGAACAAC TGAAAGAAAA TAGAGTTGTT CGCCACCTAT TGGAAACGCC TCAACAGAGC
TATGCATCGG ACATTTCCTT TCGGGAGCCT CGTAATCTAG ATAATGAGGT AAAACCCCAG
GATCTATTAA CCCCGCTACC CGCAGACTCT TCCCAGCAAA CGGCTGTTAT GGCCTCTGGT
GAGGGGAAAG ATTTTATTGT CATAGGTCCA CCAGGGACTG GAAAATCACA AACCATTGCG
AATATGATTG CGCACAATCT GGGACTAGGG CGTACGGTTT TATTTGTATC AGAAAAAGCG
GCGGCATTGA ATGTGGTTTA CCGCCGTTTA AAAGAACAGG GCCTTGGAGA GTTTTGTCTA
GAATTACACT CCAATAAAGC CCGTAAATTG GAGGTTCTTA ATCAGTTTGA TCAAGCATGG
AGGTCTAAGA GCAGCTTTTC GCAGGTGGAG TGGCAAAGAG AGGCAAACCG ACTTAAAGAG
ACTAGGGATG GCTTAAATCG TTATGTGCAG GCCATGCATC AGCCAAGCCG CCATGGCATG
ACACCCTATC AAGCCATCGG AAAAATTGCA CTTGGGGACA CAGTTGTTCA GTTAGAGCTA
AGCTTTGCCC ATGCCGATAT CCATGATCAC GCAGACTATG TAGCGCTGAC TGAGCTATGC
CATAAAATGG ATCTATACAG TAAAGATCTG GGTAGCGTTG TTGCGCATGA ACTAGCCTTT
GTCACCCATG ATGACTGGAC ACCACAATGG GTAAAAGATC TTTTGGCCAG CGCGCATTTG
CTCAAAGAGC AGGCAGATAG GTTTCAGCAA TCCATAAAGG ATCTATATCT TCTCTTTGGT
TACCCAGACC ACTCTATAAC AATATTGGAG CCCTTGTTAG CCTTGATTGG TACCATGCAA
GATTTGTATG AACAGGATGC CAGTTTTTTG TTTGAACCCA ACACTACCCA AATTGTGCAG
CAATTGGATG TGGGGATGCG TTGTGTTCAG GAGTTTACAG ACGAGCAAGA TCAATTGAGT
TGTTGTTATC AGCTGGAGGG GCTGCTAGCA CTGGATATTG ATGCTTTGAC TAAGCAGTGG
CAAGAATCAC AGCAGGCATG GTGGTTGCGG GGATGGTTTA TTAAACGTAG AGTGAACAAA
GCCCTTAAAT ATATGGGGGG GGCAGTGGGT CAACCACAAC CTCATCGCGA TCTGCCACGC
ATCAAACAAA TGAAGAAAAA GTACCAACAA TTACAAGAAT TAGACGCAGT AAACACTTGC
GTACGCCATT GGCGAGGTTT GGAGAGTGAT TTAGCGGTGA TCCAAAGATT GGTAAAGGGC
GGTCAACAGG TTAAGGCACG GATTCAGGAA ATTGCGCCAA CACCAACAGA ATTTGTGACG
CTGCAAACCG TGGTACAAAG ATGGCTCATA GAGAGTAATA CCTTGTTGGC CCCCAATGGA
ACATTACTGA CCTTATCAGC TAGGGTCAAA GAGCAACGCC AGCAATTGAT GGAAACATAC
AACCGCGTGA TAAGTTTAAC GGGTGGTGAA GTTGATGAAT TTTTACCCCT TGGCGTTCTG
TTTGGCCGAG CCCAAACCTA TGCAGCTACG CTGATTCAAA ACGAGTCGAA ACTTAACACA
TGGTGCCGCT GGCAAGCTGT ACGTAAAGAG GCGTGTGCAC AAGGTTTACG GCCTCTGGTG
GAGGCTATGG AAAAGGGGTT GTGTAAGACG GGCAAAGCCG AGCAGGTCTT TGAGATTAAC
TATGCTCGGT GGTGGATTCA TCTTGTTTTT GCAAAGGAAC CAGATTTACG CCAATTTTCA
GCAGTTGAGC ATGAGGATAA AATACGCATC TTCAGAATGT TGGATGAAAG ATTCAGTGAG
CTAACACGAG AATATATCTG TGCCAAGCAG GGTGCGAATA TTCCAGACCA GAGTGGTGTT
ACCCAAAGTT CGGAGTATGG GGTTTTAAAA CGTGAACTAC ACAAAAAAAT TCGCCACAAA
CCCGTTAGGC AATTGTTTAG AGAGATTCCT AATGTCGTGA AGCAGTTGAC GCCCTGTTTA
TTGATGAGTC CGCTTTCTAT TGCTCAATAT CTACCAACGG AAAAAGAGAA CTTTGATCTG
GTTATTTTTG ATGAAGCATC GCAGATAACA GTATGGGATG CCATTGGATC ATTGGCTCGT
GGCAAGCAAG TAGTCATTGC AGGAGATCCA AAACAGTTAC CTCCAACCAG CTTTTTTGGA
CGACGTGAAG CGGAAGATGA GGGCGATGAC ACTGGGGACG TCACCGATTT AGAATCCATT
CTGGATGAAA TGATGGGTTG TAGTATACCT CAGATACATC TTAACTGGCA TTATCGAAGC
GCGCATGAAA GCCTTATAGC CTTTTCTAAC CAGCGCTACT ATATGAATAA ACTAATCACA
TTTCCATCGG CTGTCACTGT TGACAGGGCA CTTAGATTGG TGACGGTAGA GGGTTACTAT
GATCGGGGTG GCGCGCGGCA TAACCGTGCT GAAGCCGAAG CAATTGTTAC AGAGGTGGTC
CGTCGCTTAA ATGATCCCAA TTTTGCCGGG GCGGGGAAAT CCATAGGTGT GGTGACGTTT
AATAGTGAAC AGCAAAGATT AATTGAAGAC CTGTTGGATC GTGCACGTCG TGATGATCCA
GCTTTAGAAC CCTATTTCGC GGATGAACAA TTAGAACCGG TGATTGTAAA AAATCTAGAA
TCTGTACAAG GGGATGAGCG TGATTTAATC CTATTTAGTG TAACCTATGG CCCAGATCGA
GCAGGTCATA TGACCATGAA TTTTGGCCCA CTGAACAAAC AGGGTGGAGA GCGGCGGTTA
AATGTAGCCA TTACCCGTGC GCGTAGTGAA TTGATTGTAT TCTCAACTTT AAAACCTGAA
CAAATGGATC TATCTCGAAC TCAGGCTAAT GGCGTTGTTG ATTTAAAAGA TTTTCTCAGA
TACGCAGATC GTGGGAAAAT GGCTCTGGAT GAGGTATCGC ATGGATCTAT TGGTGGTTAT
GATTCTCCGT TTGAGGAAGC AGTTTCCGAA GCATTAACCC GTAAAGGGTG GCGGGTCCAT
TCACAGATAG GTGTTTCCGC CTTTAGAATA GATTTGGGGA TTGTGCATCC CCAAAGAGAG
GGTCACTATT TTGTAGGTGT TGAGTGTGAT GGTGCAACCT ATCATAGTTC GGCTACTGCT
AGAGACCGGG ACAAAGTACG AGAAGCCATT CTTGAACGTT TAGGCTGGCG TTTGGTGCGT
GTTTGGTCCT TAGATTGGTG GGTAAACCCC AAAGATACGT TAGAAAAATT AGATCAGCGC
ATCCAAGCTA TATTAGCAGA GGTGGATATA CAAATTGCGA GGGAAGAGGA GATCAGAAAA
ACGGCGGAGG AAGCTTTTTA TCAAGCTAAG CAAGCCGCTA CGGCTGCCCT TTTTGAAGAG
AATGGTGCAA AGCTCAAGGC TGAATCCGCT ACAATAGGCG AGCTTTCACA AACAAGTACT
ACCGATGCCA AGGTGTTACA AGTCCGGTCC ATGCAGGCTG ATAAAGAAGA TCGTAGTTAC
TATAGGATTG CCACTTTTGA GAAATTAAAT CTGAAACTTA ATCCTGATCT CTTTTATGAA
TATAGTTACA CGCCAACGGT GCGCATGATG GTTGAGCATA TCCTTGAGAT TGAGTCACCT
ATCCGCGAAG ACTTGCTCAT TAGACGTATC GCACAGGCTC ATGGGTTCAA ACGGTCAGGT
CGGCTGATCG TTGAGCGCGT CATGCAGATC GTTGAAGAGA CAGCAGAAGT GACTCATGAA
GAAGGGGTGG GTAATTTTCT GTGGAAACGA GGGGTAGATC TTTCTAGTTG GTCGGAGATT
CGTTATCCGC AACAAGGTGA GCGTGAAGCA CGTAGACCAG ATGAAATAGC CATTCAAGAG
CTAATGACCC TTGCTAAAGA GCACCAAGGA GAAGGGGCCT TGATCGATAC TATGGCCAGA
AGTTTGGGGG TGTTTAGATT AAATGAGCGT AACAGGACAC GCTTACAGTT AGCCGCTCAA
ATGGCTACTA AGTCAGCACC AGTAGAACCA GCAGTTCTCT AA
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| Protein sequence | MDTLILHVSV QEKINFATQQ NAVPILRELS IENIGQESVA NLRLTLTSNP VFLVRKTWHL
DQLEPGLRLT VSDRDIRLDA GLLMSLHESL RGDLRVELYQ DDLLLVEKNI EVELLARHQW
GGSQFMPEML AAFIEPNDTF IAEILRSASS LLQKNGLESG LDGYQKDSSV RVGEVVSAIW
SAIAALGITY AEPPASFEQN GQKIRLPSII KQTGLATCLD LALLFASAME QAGLNSLIII
TQDHAFPGVW LKPQTFPTVL IKTALDIRKR FDLQELLVFE STFATSRTNP VPFHKAVKKG
RAQLEEHGQF YMAIDVQRAR MYQIRPLYWE DQCASKDQLN VEQVSSMGVD LLEFSDQGVI
PEQESLKPTT ASGRLELWQK KLLDLSLRNK LLNFKLNGSS ALVLICPDPG LLEDKLAQKM
KLSIESLPEM GSSNNGRDAQ LHTQRTGGGL IEEFVTKALE KNQLYVQEEK EALDKRLTSL
FRRSKADLDE GGANTLYLAL GFLIWWRSND PNKKYYAPLI LIPVTLERKS IQSGVRMVLH
EDEPRFNTTL LQMLRQDFRL EIPGLEGELP TDTHGVDVHG IWHKVRHHVR DVEGFEVVEE
VALSNFSFAK YLMWKDLVDR TEQLKENRVV RHLLETPQQS YASDISFREP RNLDNEVKPQ
DLLTPLPADS SQQTAVMASG EGKDFIVIGP PGTGKSQTIA NMIAHNLGLG RTVLFVSEKA
AALNVVYRRL KEQGLGEFCL ELHSNKARKL EVLNQFDQAW RSKSSFSQVE WQREANRLKE
TRDGLNRYVQ AMHQPSRHGM TPYQAIGKIA LGDTVVQLEL SFAHADIHDH ADYVALTELC
HKMDLYSKDL GSVVAHELAF VTHDDWTPQW VKDLLASAHL LKEQADRFQQ SIKDLYLLFG
YPDHSITILE PLLALIGTMQ DLYEQDASFL FEPNTTQIVQ QLDVGMRCVQ EFTDEQDQLS
CCYQLEGLLA LDIDALTKQW QESQQAWWLR GWFIKRRVNK ALKYMGGAVG QPQPHRDLPR
IKQMKKKYQQ LQELDAVNTC VRHWRGLESD LAVIQRLVKG GQQVKARIQE IAPTPTEFVT
LQTVVQRWLI ESNTLLAPNG TLLTLSARVK EQRQQLMETY NRVISLTGGE VDEFLPLGVL
FGRAQTYAAT LIQNESKLNT WCRWQAVRKE ACAQGLRPLV EAMEKGLCKT GKAEQVFEIN
YARWWIHLVF AKEPDLRQFS AVEHEDKIRI FRMLDERFSE LTREYICAKQ GANIPDQSGV
TQSSEYGVLK RELHKKIRHK PVRQLFREIP NVVKQLTPCL LMSPLSIAQY LPTEKENFDL
VIFDEASQIT VWDAIGSLAR GKQVVIAGDP KQLPPTSFFG RREAEDEGDD TGDVTDLESI
LDEMMGCSIP QIHLNWHYRS AHESLIAFSN QRYYMNKLIT FPSAVTVDRA LRLVTVEGYY
DRGGARHNRA EAEAIVTEVV RRLNDPNFAG AGKSIGVVTF NSEQQRLIED LLDRARRDDP
ALEPYFADEQ LEPVIVKNLE SVQGDERDLI LFSVTYGPDR AGHMTMNFGP LNKQGGERRL
NVAITRARSE LIVFSTLKPE QMDLSRTQAN GVVDLKDFLR YADRGKMALD EVSHGSIGGY
DSPFEEAVSE ALTRKGWRVH SQIGVSAFRI DLGIVHPQRE GHYFVGVECD GATYHSSATA
RDRDKVREAI LERLGWRLVR VWSLDWWVNP KDTLEKLDQR IQAILAEVDI QIAREEEIRK
TAEEAFYQAK QAATAALFEE NGAKLKAESA TIGELSQTST TDAKVLQVRS MQADKEDRSY
YRIATFEKLN LKLNPDLFYE YSYTPTVRMM VEHILEIESP IREDLLIRRI AQAHGFKRSG
RLIVERVMQI VEETAEVTHE EGVGNFLWKR GVDLSSWSEI RYPQQGEREA RRPDEIAIQE
LMTLAKEHQG EGALIDTMAR SLGVFRLNER NRTRLQLAAQ MATKSAPVEP AVL
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