| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0198 |
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| Symbol | |
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| ID | 4483444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 217909 |
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| End bp | 219450 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639720943 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_864131 |
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| Protein GI | 117923514 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATG CCGAGTTTTT AGAGGGACTT CTCCAACTGG AAGCAGAGCT GGAACAACGA
CCAGCCGCAG GGGAGCGGCA TGACTATACC ATGCTCACCA GTTTCTATCT GGAGAGTCTG
CCCCGCGCGA TGCATTGTGA TGCGGTGCAG CTCTATCTGT TGGAAGCAAA CCAGTGGTAT
CGCATGCTTG CCAACCCCCT GCATGGAGAG CCCATAACAT TGGAGAGCGG CAGTACCATC
CCTGCTTGTA TCGAGAGCCA TCAAGCCTTA ATTACCCGTC AACCAGGACA CCAAGCACGT
CTCTGTATGC CGCTGGTCAG CCGGGTCAGG CGGCGGGTAT TGGGGGTGAT TGAGCTGTTG
CGTTTTGGCG AGCAGGCACA GTTTACGGCG GCGGATTTGA CCCGTTTGGA ACCCGGTGCT
GAAAATTTGT GTCAGGCACT GGATAACCTG TTGGTTACTG GCGCGTTGGT TACCCAGCCG
GGGCAGCCCA GCCAGCCCCC GCCGCCGGTG GATGTGACCA TCCGCAGTGT TGGGGTGGTC
GCCGAAAGTG CGGTCATGCG CGAGGTGTTT ACCTTGGCCA ATACCCTAAG TGCGGTGCCG
GTGAATGTCT TTATCAGCGG GGAAAATGGC ACGGGTAAAG AGGTGGTCTC CCGCTATATC
CATGATAACA GCACCGAGGG AGAGCAACCC TTTGTGGCGG TTAACTGTGC GGCCATTCCA
GAATCCCTGG CGGAGAGTGA ATTTTTTGGC TACGAAAAGG GGGCCTTTAC CGGTGCTGTA
GGTAGCCGAA AAGGCCATTT TGAGGCAGCC AATGGGGGGG TTCTGTTTTT GGATGAAATT
GCCGATTTGC CCCTCTCCAT TCAACCAAAA TTTCTGCGCG CTTTACAAGA GCAAGAGGGG
CAACGTCTTG GTGGGCAGAA GAGCGTGCCT TACCATTTTC GGGTGATCAG TGCCACCAAT
AAGGATATTC GGCAAGAGGT GGCGGCGGGG CGGTTTCGCG AAGATCTCTT TTATCGATTG
TTTGCGGTGG ATATTCACAT TCCCCCCTTG CGGGAGCGAA GAGAGGAGAT TTTACCCCTG
GCGCGGGCCT TTTTGCGGGA TATTAACCAG CGCTTTGGCA AAAAGGTTCC TGGTTTAAAT
CCAGAGGTTG CCGAACGCTT TGAGCGCTAC CATTGGCCCG GCAATGTGCG CCAGTTGCGC
CGCGAGATGG AACGTTTGGT GGCCCTTACG CCAGATGGGG CATCCATCGG CTTAGCCGCT
TGTTCTCCTG AGCTGCGCCA CAGTAGCCCG GTGCCCCCTG CGTTGGAGAG TTCGACTCTG
CCGCTGTCAG GCTCACTATT GACCCCAACG GCGGCGGTTT TTCCCCTGCA TCCCCATCTC
CCTATGGCGC AACAGATGGT GCTGTTTGAG CGACACCTGA TTGAGACAGC CCTACAGCAA
CATAACCATA ACCGTACCCA TGCGGCCCAA CAGTTGGGCA TTACCCGCCA ATGGCTGCTT
AAGCGACTGC GTTATTATGA ACAGTTGGAT CAGACCACCT AA
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| Protein sequence | MDDAEFLEGL LQLEAELEQR PAAGERHDYT MLTSFYLESL PRAMHCDAVQ LYLLEANQWY
RMLANPLHGE PITLESGSTI PACIESHQAL ITRQPGHQAR LCMPLVSRVR RRVLGVIELL
RFGEQAQFTA ADLTRLEPGA ENLCQALDNL LVTGALVTQP GQPSQPPPPV DVTIRSVGVV
AESAVMREVF TLANTLSAVP VNVFISGENG TGKEVVSRYI HDNSTEGEQP FVAVNCAAIP
ESLAESEFFG YEKGAFTGAV GSRKGHFEAA NGGVLFLDEI ADLPLSIQPK FLRALQEQEG
QRLGGQKSVP YHFRVISATN KDIRQEVAAG RFREDLFYRL FAVDIHIPPL RERREEILPL
ARAFLRDINQ RFGKKVPGLN PEVAERFERY HWPGNVRQLR REMERLVALT PDGASIGLAA
CSPELRHSSP VPPALESSTL PLSGSLLTPT AAVFPLHPHL PMAQQMVLFE RHLIETALQQ
HNHNRTHAAQ QLGITRQWLL KRLRYYEQLD QTT
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