| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0046 |
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| Symbol | |
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| ID | 4482614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 48503 |
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| End bp | 49666 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639720792 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_863981 |
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| Protein GI | 117923364 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00905403 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTTT ATTCACCCGA AATGGTGGAT CCGGTGGCAC TGGCGCGGGC CTTAATTCAG
GCCCCGTCAG TGACGCCAAT GGATCATGGC TGCCAAGATC TGCTGATTCG CCATCTGGAG
GATCTGGGTT TTACGGTGCA TCGACTGCGT TTTGGTCATG TGGAGAACTT TTACGCGCGG
CTGGGCAGCA AGGGGCGCAA TTTTACCTTT GCCGGACATA CCGATGTGGT GGGGGCAGGG
GATACCAGCC GCTGGTCCAG TGACCCCTTT GCAGCGACCC TGGAAGAGGG CTATATCACG
GGCCGTGGGG CGGTGGATAT GAAGGGTGGC TTGGCCTGTA TGGTCGCCGC GACCGCGCGT
TTTTTGGCGG CGCGTCCCCA TTTTGCGCAG CAGCATAGCC TAAGTTTTCT CATTACCGGT
GATGAAGAGG GGGATGCGCT GGATGGCACC CTCAAGGTGT TACAGTGGTT GGAGAGCCAG
CAGGAGAAGA TGGATTACTG CTTGGTGGGG GAGCCCACCA GTGCGGCACA GTTGGGGGAT
TGCATCAAGA ATGGGCGGCG TGGTTCGGTG AACGGTCGTT TGACCATTCG CGGGGTGCAG
GGGCATGTGG CGTATCCCCA TTTGGTGGAT AATCCCATTC ACCGGGCCGC CCCGGTGCTG
GCGGCGATTA GCAGCATGAC GTTTGACCAA GGGGATCGGT TTTTTCAGCC GACTTCTCTT
CAGTTTACGG CGGTGCAGTC GGGTGGTAGT GCCACCAACG TGGTGCCGGG TGAGCTGACG
GCGGGGTTTA ATATCCGCTT TAGTGCCATG CACACCCCCG AGAGCTTGGA GGCCCGCATA
CGCCAAGTGT TGGATGGGGC CGAGGTCGAT TATGATCTAC AGATGATGAC CTCGGGACTG
CCCTTTATTA CCGAGGGTGG GCCTCTGGTG GAGGCGGTCA AGGCAACGGT GGCGCAGGTC
ACAGGGTTGG AGCCGCAGCT CTCCACCGGC GGGGGCACCT CGGACGCCCG TTTTATCTCC
CGCCATTGTG TGCAGACGGT GGAGTTTGGT CTGGTGGGCA GTACCATGCA CAAAGTGGAT
GAGCGGGTGC CGGTGGCGGA TTTAGAGGTG TTGACCGAGG TATACCGGCG GCTGTTGGAG
CGGCTCTACC CCCCCCAGGG GTGA
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| Protein sequence | MTVYSPEMVD PVALARALIQ APSVTPMDHG CQDLLIRHLE DLGFTVHRLR FGHVENFYAR
LGSKGRNFTF AGHTDVVGAG DTSRWSSDPF AATLEEGYIT GRGAVDMKGG LACMVAATAR
FLAARPHFAQ QHSLSFLITG DEEGDALDGT LKVLQWLESQ QEKMDYCLVG EPTSAAQLGD
CIKNGRRGSV NGRLTIRGVQ GHVAYPHLVD NPIHRAAPVL AAISSMTFDQ GDRFFQPTSL
QFTAVQSGGS ATNVVPGELT AGFNIRFSAM HTPESLEARI RQVLDGAEVD YDLQMMTSGL
PFITEGGPLV EAVKATVAQV TGLEPQLSTG GGTSDARFIS RHCVQTVEFG LVGSTMHKVD
ERVPVADLEV LTEVYRRLLE RLYPPQG
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