| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4385 |
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| Symbol | |
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| ID | 4476013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008573 |
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| Strand | - |
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| Start bp | 272391 |
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| End bp | 273635 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639720740 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_863898 |
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| Protein GI | 117676322 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.517325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.3317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATA ACAACACCTT TTCGTCATTG AGTTTGGCGA TACTGCTCAG TCTGGGTATT
AATGCCGTCG CTTCAACACC TTTAATGGCA TCCTCAGCGC CCGTTGCCGA GCAAGCTGAA
CCCGAAAAAG GGCCGCATCG TGGACGTATG CTGCGTGAGG GCGATTTTGC ACTAGAGCTC
GCCATTTTTG AAACGGGCGT TCCCCCTGAG TTCCGTGTTT GGACGAGCTT TGAGGGGAAA
CCGCTCGATC CTAAGACCGT CGATTTGAGT GTGAAATTGA CCCGTTTAGG CAATGTGGTG
GATGACATTC GCTTTAATGC GCAGGGTGAT TTTCTCCGTG GTGATATGGA GATCTATGAA
CCCCATTCGT TTATCGTCAC CATTGAGGCG AAATACCAAG GTAAAACATA CCGTTGGCAG
TATGACAACT TTGAAGGCCG TACCACTATC GAGCAGGCTG TTGCCAGTGC GATGGAGATT
CACTCTGGTT TTGCAGGCCC TGCCACATTG CATCAAACCA TCCCAGCCTA TGGCACATTG
GCGCTACCCG TCGGGACGCA ACGTGCAATT GCGGCACGTT TTGACGGCGA AATTACCCGG
TTACATGTTG GACTGGGTGA CAGGGTGAAA AAGGGGCAAA CCCTTTTGAC TGTAGAAAGT
AATGAGAGCT TAAAACCCTA TCAAATTAAA GCGCCGTCCG ATGGCGTGGT GTCAGCATTG
TTCGCCAACA ATGGAGAACA AACCCTAGGG CGTCAGTTGT TGACACTGAC CGATAACAGT
CACTATATCG CTAAGCTTGC TGTGTACCCC ATTGATTATC AAAGCGTCAT CTTAGGTGCA
CCTGTCACTA TCAACGTCGA GGGTGTGGAG GAAACCTATC AAGGTTCCAT TAGCTTTATT
GAACCAGAGG TTCGTGACGA TCAAGCCCGT ATTGCGTGGG TCAAACTTGC CGATCCTAAC
GGGGTTTTGA CTGCGGGCAG TTTTGTAAAT GCCAGTATTG AAGTCGCAAC CATTGAGGTG
CCATTGGCGG TTAAAAGAGT CGGATTACAA GGGTTTCGTG ATTTTACCGT CGTCTTTGCT
AAGGTCGGAG AGCAGTACGA AGTCCGTATG CTGGAGCTTG GCCGTCAAGA CGGTGAGTGG
GTCGAAGTGC TTGGTGGCTT AAAGCCTGGT ACTGAATACG TGACCGATAA TAGCTACATC
TTAAAAGCCG ACATTGAAAA GTCTGGCGCA TCACACGATC ACTAG
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| Protein sequence | MKNNNTFSSL SLAILLSLGI NAVASTPLMA SSAPVAEQAE PEKGPHRGRM LREGDFALEL
AIFETGVPPE FRVWTSFEGK PLDPKTVDLS VKLTRLGNVV DDIRFNAQGD FLRGDMEIYE
PHSFIVTIEA KYQGKTYRWQ YDNFEGRTTI EQAVASAMEI HSGFAGPATL HQTIPAYGTL
ALPVGTQRAI AARFDGEITR LHVGLGDRVK KGQTLLTVES NESLKPYQIK APSDGVVSAL
FANNGEQTLG RQLLTLTDNS HYIAKLAVYP IDYQSVILGA PVTINVEGVE ETYQGSISFI
EPEVRDDQAR IAWVKLADPN GVLTAGSFVN ASIEVATIEV PLAVKRVGLQ GFRDFTVVFA
KVGEQYEVRM LELGRQDGEW VEVLGGLKPG TEYVTDNSYI LKADIEKSGA SHDH
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