| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4253 |
|---|
| Symbol | |
|---|
| ID | 4475846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | - |
|---|
| Start bp | 129607 |
|---|
| End bp | 131877 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639720610 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_863768 |
|---|
| Protein GI | 117676192 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00783539 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAA GTAATTTGAG TGGCATTCGG CTTCTACACG TAAATCAAGA CTCCGTAGCG
GTATTCCCCA CTTGGGAATA TGAGTTAGTC ATAGACAATT TGGCCGTTTC CGTTGACCTC
CAAAGACTAA TGAATCATCA ATGTGATCCC TCAGAAAAGA AGGTAGACAG GCAGCAACAA
ATTGTACGTT ACGCTCAGAC CTTTCGACAT GAAATGGATA GAAAATCAGC GCATGCAACC
TTGTATAACA ATTTTCTAAA GTTCAAACAA TATTTGGTAT GGTGTGATCA AAATAGCTTA
CCCCCTTTTA CTGAAGCGAC TTTGCGGCAA TACCACAACT ATTTATGGGA GCTTGTTCTG
ATAGGTAGTT CTTCTGTGCC AATTTGGCAA ATGTTGGAAG GACATACCAC TGGAGTAAAG
GAGCGTACTG CAAACTACAT CTTTTCCACA ACAGAACAGG CATTAACATG GTGTGGTGAA
ACTGCTTTTC AGTGGGGGAA ACAGCTCAAG CAATTACGTG TAGGCAAAGT AGAATCTTAT
GAAGCATACT CAGAAAATGA ACTACCAGAG CTCCTTAGTC GGCTGTCTTC GTATTTTTTT
CAGTTAGCCA TTCCTTTATT GAGCGATACC CCGCCAGACA TGGTGTCTGT TGAAATCAAT
CAAACGTGCT TTTATGTACC TGTCCGTTCC TGCAATACAA AAGGTCGATC TAAGGGCGCT
GAGTTGAATG TCGATACAGC ATTTAACCAA GCGATGGCAT GTGGTTATTA CCTTCTCAGT
TACTTTACGG CATTCAACAC GAGTCAATTA ACTGATCTAT GCCATCCTAT AGAATGGCGA
GAAGATAAGA CCGGCGAATA CTATAAATTG ACAGCCTTCA AAAGAAGGGC CAATAAGGAA
GTTCTCTCAT TCGTGGGGGG AGAAATACAT AAGAAGTCAT TGCAGTTTAT TCAAACGCTG
ATTGCTCTTT CGTTGAAATA TACCACAGAT GCAAACAGCA AATTGCTCTA TTGGCGGGGT
AGAGATGGTA ACCAGCGCAG TATAAGTTCG ATTTTATTGG GTAAAATTGA ACTTAGTAGC
CGTCTGCTAA TGCTATCAGA CAAGGCAACT CAGAGTATCC CATATCTAAT GTCTATTCAT
AGCAAATTTA CTGAAACAGT TCCAAAGGGG TTTGTTGAAT TCGATGAGCT AAAATTTGTG
GACAGAACAC TCGTTAAACG CAGGAAAACT GTTCGTCGTT TTTACAACCG TCGAACAATT
GCTCTCAGCT TTGCCCTCTT GTTCGCAATC ATTAAAGCCA ACCCGAAAAA TGGCACTAAT
ACTGTTAACC TGAAGAATGT AGTGCTGCCA TTAAAAATTA CCCGTACGGA TGAGTTGCTA
AAGATAGATT TTTCCTGTGA AGATGGAGGC CAAGGCAGTT TCTATGTTGA TATTCAATAT
GAAGCGTTCT TAGCACGAGT AGAAGCTTAT GCTGCGTTCA GGCAAAGTAA ACAAACATCA
GCTCACTATC TATTGCCTCT AGGTTCCGAG AGAGATGCTA TTCAATGGCA AGGACTGGCA
CCAAGCATGG CTTCGCTAGC GGATTACGGA ATTCGTTCTG GCGAGTTTTT TGTCAACTTG
GCATCCAGTC GTTTTAGGGA AACAGCAGCA AAACTTGCTA GGCGAAAAGC CAACAGAACA
GAATTGCAAA TATCACAAAT ATTGAATAAT CAGTATCGAA CCGTACTCAA GCATTATAGT
GAGGGGAATC ATTACGATAA CCAGTTGATA ATCTCGCAGG GTTTATCCGT CATTGAAAAA
ATGAGTAAAG GTGGTTCCTT AGATCAATCT AAGGCTAAAG TTGCTACCGA GTTAGCGATT
CCGGTCATCA AATATGATGA ATTAATAGGT AGCCAAGCAA GTTTAAATGG CGTTGGTATG
GCATGCTTTC AGAAATCACT GAGCACAGAA GAAAGCTATC TTGCTGCGAA TGCTACCGCA
TGTTTTGACT ATGAACGTTG TATCAAATGC CAGTATGCAA AGATCATAAA TGATGTCGAA
CCACTCTATC GACTACTGTC CTTTTTGGAG TGTATGGAAG AAAGTTGGCT TTATTATCCA
GAACGGTTTT CGAAAAATTT AGGGAAGGCT GTTGAATTAT ATAGAAAGGC GATTTCGAGT
TCCCTATCAC CTGACATCAT TCAACGGGCG CGGTATAAAT TAGATACTGT TGGTAGGCAC
ATGCTGTGGG ACAATCTAGA ACTATCTTCT CTAGGTTTTA AAGGAATATA A
|
|---|
| Protein sequence | MTKSNLSGIR LLHVNQDSVA VFPTWEYELV IDNLAVSVDL QRLMNHQCDP SEKKVDRQQQ
IVRYAQTFRH EMDRKSAHAT LYNNFLKFKQ YLVWCDQNSL PPFTEATLRQ YHNYLWELVL
IGSSSVPIWQ MLEGHTTGVK ERTANYIFST TEQALTWCGE TAFQWGKQLK QLRVGKVESY
EAYSENELPE LLSRLSSYFF QLAIPLLSDT PPDMVSVEIN QTCFYVPVRS CNTKGRSKGA
ELNVDTAFNQ AMACGYYLLS YFTAFNTSQL TDLCHPIEWR EDKTGEYYKL TAFKRRANKE
VLSFVGGEIH KKSLQFIQTL IALSLKYTTD ANSKLLYWRG RDGNQRSISS ILLGKIELSS
RLLMLSDKAT QSIPYLMSIH SKFTETVPKG FVEFDELKFV DRTLVKRRKT VRRFYNRRTI
ALSFALLFAI IKANPKNGTN TVNLKNVVLP LKITRTDELL KIDFSCEDGG QGSFYVDIQY
EAFLARVEAY AAFRQSKQTS AHYLLPLGSE RDAIQWQGLA PSMASLADYG IRSGEFFVNL
ASSRFRETAA KLARRKANRT ELQISQILNN QYRTVLKHYS EGNHYDNQLI ISQGLSVIEK
MSKGGSLDQS KAKVATELAI PVIKYDELIG SQASLNGVGM ACFQKSLSTE ESYLAANATA
CFDYERCIKC QYAKIINDVE PLYRLLSFLE CMEESWLYYP ERFSKNLGKA VELYRKAISS
SLSPDIIQRA RYKLDTVGRH MLWDNLELSS LGFKGI
|
|---|
| |