| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4227 |
|---|
| Symbol | |
|---|
| ID | 4475986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | - |
|---|
| Start bp | 100875 |
|---|
| End bp | 102038 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639720585 |
|---|
| Product | initiator RepB protein |
|---|
| Protein accession | YP_863743 |
|---|
| Protein GI | 117676167 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0931296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA AAGCAAACAA CAAACAGGTA CTACAGGGTT CAGATGGGGT AACTACAACA
TCGAAGAAAG TCAAAACTGA CAAATTCGAT GTACATCCAG AAGCGCAATT ACCGCAGACG
TATAAGAAAA ACCACAACTT AATCTACAGT CGTATATCGA TGACGACCCA TGAGCAAAAT
CTACTTGCCC TATTTCTGAT CCAGATGCAA AAGACAGAGT GGAAAGAAGA AACCCAGCTC
GAAATTTCTA TCCCCGCCTC TAGGTTGGCT GATTGGCTTG AAGTTGAATC CAAAAGCCTT
GCGGCAACAA TTAAACCTGT CGCTCTTAGG CTTCAGAAAC GAACGGTTTT AGCAGAGCAT
CCGACGACTC ATGAATTTGA ATCATCCGTC CTTTTCCCGA CAGTGAAATA TGCACGTGGA
AAGTTAACAA TGGTACCAAA TTATGACTTG AGAGACTTTT TTCACGACGC GTCAAAAGGA
TACGCTTCCG TTAACGTGGC TAGATTCCTA CGACTGAGGG GAAAATACTC TAAACCAATG
TATGACCTAT TATCGAGGTT CAAAACCCCT GAGAAGCAGT TGTATAAGAC AGACGTTATG
ACTCTCAAAG GTATTTTCGG GTTAGTTGAC GACAAAGATA ACTATCTGCC AGGCAAGAAA
ACCATGAAGG ACACATCGGT ATTCGTCAAT CAGGCGCTGG TAAAGTCGAT TGAAGAAATA
GAGGAGGCTT GTAGTGACGA GGTAATGTTT TTCAACACAG ATCCTTCTGG TAAAAAACGT
CATGGCATCA TTGAAAACAA AACAGGCAAC AAAATTACCA GCATTGAGTT CGAGTACCTT
TGGATAGATC AATTCATCAA ATTGCATCCA ATGGATCTTG AAGCAGCAGC GGAAGTCGCA
ATGAATGCAG AGAATCGTCT GCGTATGAAA AAAGAAACGC TTACTCAAGA AGAGACTGAG
CAGCTGGCCG TAGCTTACTA CGTTCTCTCA TCACACTATG AGAAATACAG ACCGCGCTGT
AGAGAATTAT TTTACGACAT TTACAAACAC TACCGAAAAA TATCGATTGA GAAAGCAGAA
AACGAATCTG AACAAACTGA ACGACCAAAA CTGAAGAGTT CTGCACTCGA TAAGTTAGAT
TTCTTGTTAA ACGTCAATAC CTGA
|
|---|
| Protein sequence | MTDKANNKQV LQGSDGVTTT SKKVKTDKFD VHPEAQLPQT YKKNHNLIYS RISMTTHEQN
LLALFLIQMQ KTEWKEETQL EISIPASRLA DWLEVESKSL AATIKPVALR LQKRTVLAEH
PTTHEFESSV LFPTVKYARG KLTMVPNYDL RDFFHDASKG YASVNVARFL RLRGKYSKPM
YDLLSRFKTP EKQLYKTDVM TLKGIFGLVD DKDNYLPGKK TMKDTSVFVN QALVKSIEEI
EEACSDEVMF FNTDPSGKKR HGIIENKTGN KITSIEFEYL WIDQFIKLHP MDLEAAAEVA
MNAENRLRMK KETLTQEETE QLAVAYYVLS SHYEKYRPRC RELFYDIYKH YRKISIEKAE
NESEQTERPK LKSSALDKLD FLLNVNT
|
|---|
| |