| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4218 |
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| Symbol | |
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| ID | 4475977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008573 |
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| Strand | - |
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| Start bp | 89025 |
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| End bp | 91709 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639720576 |
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| Product | Type IV secretory pathway VirB4 components-like protein |
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| Protein accession | YP_863734 |
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| Protein GI | 117676158 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.750787 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTG TAAATAACTG GAAAAATAGT CTAGGCATTG AGAAATATTC CTCAATCATC
CCAATCTTAG ATGAATTTGT GAGTGAGGAA GGGGAACATC TTGGTTACAT CCTAGAAGGG
GGTTACCTTG GCGTAACGTG GCTATGCCCA CCGTCAGGTG GTTATGGTGC GAGTACGATT
TCCACGCTGG ATTCGATTTT CAAAAAAGTC TATCCAGAAG GGACTGTGCT GCAATTCTCG
CTAGTGGCTT CAGACGACTT AGTAACAGTG TTAGACAATT ACCGACATTG CCGTGGCAAG
CGTAATCGGT TCGATACGGT CATTGATAAT GACAATATGA CCGAATACAT GGTTGATTAT
TATAAAGCGC TTGCTGATAC CTCAATCCCT TCGCGAGATA TGGAAGGTGT ACCGCTTCGC
AACTTCGAGG TATGGGCGTC AATCAAGGTG CCTATCAAGA AAGCCATGCC GTCTACAGAG
GAAGTCGAAG ATTTTGTCGA TATGGCTAAC AACCATGAAG CGTCATTACA ACAAATCTTT
GGTGTAGCGA CCAAAATGCA ACCGGAGATC CTAATTAACC GATTGCAGAT GATCCACAAC
CCATCCCCGA ATGCAGTTTG GCGCCGTGGA ATTAAAGTAG ATGGCAGACA AGGCTGTTAC
CGTTCTTCTC AGCCCATCCG TGCGCAGTTA CTTGAACCTG GCACTGAGGT CAAAGTCGAT
GGTTCTGATT ACATGGCGAT TAAAGCGGAA GATGGTTCTA AACGATTTAT TCAAAGTGTG
AGCATTAAAG AGTTCCCAGA TTCCATTTAC CAAGGCACGT TACATTTAAT GACTGGCGAT
TGGTTGAAAG GGGATGATGG CGCTATTCCC GGCAATTTCA TGATCAACCT CGTGGTTGAA
ATGAGCCCTA AGAAAGTAGC TAAGGATTAC TCCAAGCGCC GCCTAATGGC TAAACAGATA
GGTGAAGGCC CGTGGGCTCG TTGGATTTCG TCTTTGAAAT ACGGCCTGCA AGATTTTGAA
TACTACGAGC ATTATCTAGA GCGCGAAAAG GCTCAGCATT GCCGCTTTCA TTTAAACTTT
CAAATGTGGG GACCGACTTT AAAGTCAGTT AAGAACAGTA CTAAAAAACT AATCACGCGC
ATGGAAGGCT TTAGTTGGTC AGCTGGCGTG GATAGCTTGA TTGGCCGTTT CACTTGGCTA
AATGGTCTGC CAATGTGTAC CTCAAGTGAA GTCAGTAGTT TCATTGAACG CTTTGACTTT
CTCCCGAGTA ACTTGGTCAA GTTCTTCGTT CCTATGGTGG CATCGTGGCC AGGGAACGCA
GTGCGACATC CTGTGCTGAC ATACATTGCC CGTGATGGTC AGTTAATCAC CTTTGACCCA
TTAAAGTCAG ACTCCAATTA CAACATCTTT ATAACCGCAA CCTCTGGCGC TGGGAAGTCG
GTCTCTGCTA ACTATTTGAT TGAAGGTCTA CTTTCAACCG GAGAAAACCG TTATCCAGAT
GCACTTGGTA ATATCCACGG TGATCCTGAT GGTGGCCGCG TGTTCATCAT CGACTCAGGC
CGCTCATACG TTAAAACAAC AGAGTTGTAC GCAGGACAGT TCGTTGAGGT TATGCCGGAC
AACCGATTTG CGTTTAACCT ATGTCCTTTT AAGAGTATCG ACGAATCTCA AAAAGATACT
GATGAAGGCG TTGTAGATAG TGACGCTAAC AACTATTTAG GCGCTCAAGG TGAAATGCTG
TTGAACGTCC TGAAGTTGAT GGCTTTCCCA CTTGGAGACT GTAACAGCTA TCAATACTCT
GCAATGTCAG TATTGCTCAT GCAACTGTGG AACGAGAAGG GTAGGGAAAC CAGTATTGAC
GATTTCGCTG ATGCTTGTGC AAAACATCCC CGTGAAGAAG TGCGGCAAAT CAGCGACCAA
TTGACTCCTT GGTGTTACTT ACGCGGTGGC CAAAACAGTT GGATGTTCAA CCCTAACAAG
CCGCCCATTC AGTTTGAGAA GGATTTAGTG GTGCTAGAGC TTGACGGACT TAACGGTTCA
GACCAGCTCA AAGCAGTGTG TATCATGCTG TGTATTCAAC GTATTCAACA GGAAATGTTT
AGGCATGACC AACTGCATAT TGTGAAAGCC TTTATTCTCG ATGAAGCGTG GGAGTTCTTG
AAGGAAAACA AGGGTGTAGA TGAGCAGACC CGTCAGGTTC TTCAAACTCT GGCAAAATTC
CTCGAATCAG GTTGGCGTCG TTTCCGTAAG TACAACAGCT TGGGTGTGTG TATTTCGCAA
TCGATGAAGG ATGCCAACGA ATCGCCTGCG GGTATCGCGA TGGCCAGTAA CTCGGCTCAC
TTATTCTACC TCATGCAAAA CGGTGAGGAA CTGGCCCGAC TCAATAAAGA GGGTAAGTTC
ATTGAGCAGG ATTACCTTTT ACTGAGGAAT ATCAAGACGG TTAGGCCGTT TTTCAGTGAA
GTTCTGTTAT GCAGTGGCGG AACAAAATCT GTAGGCAGGC TATATCTGCC AAGGGCTAAA
GCACTGACTT ACTCTACCGC TCCAGACGAG AAAAAACAGA TTGAAATCAT GATGAAAGAC
AAGGGGGTCG ATATGTTTAC CGCTTGCCAG ATGATTGCTG AAAGGGAAGG AAAAGATCTA
GTCGGGACAT GGCGACGTCG ATTCGACGCC GAAAATGAAT CTTAG
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| Protein sequence | MTTVNNWKNS LGIEKYSSII PILDEFVSEE GEHLGYILEG GYLGVTWLCP PSGGYGASTI
STLDSIFKKV YPEGTVLQFS LVASDDLVTV LDNYRHCRGK RNRFDTVIDN DNMTEYMVDY
YKALADTSIP SRDMEGVPLR NFEVWASIKV PIKKAMPSTE EVEDFVDMAN NHEASLQQIF
GVATKMQPEI LINRLQMIHN PSPNAVWRRG IKVDGRQGCY RSSQPIRAQL LEPGTEVKVD
GSDYMAIKAE DGSKRFIQSV SIKEFPDSIY QGTLHLMTGD WLKGDDGAIP GNFMINLVVE
MSPKKVAKDY SKRRLMAKQI GEGPWARWIS SLKYGLQDFE YYEHYLEREK AQHCRFHLNF
QMWGPTLKSV KNSTKKLITR MEGFSWSAGV DSLIGRFTWL NGLPMCTSSE VSSFIERFDF
LPSNLVKFFV PMVASWPGNA VRHPVLTYIA RDGQLITFDP LKSDSNYNIF ITATSGAGKS
VSANYLIEGL LSTGENRYPD ALGNIHGDPD GGRVFIIDSG RSYVKTTELY AGQFVEVMPD
NRFAFNLCPF KSIDESQKDT DEGVVDSDAN NYLGAQGEML LNVLKLMAFP LGDCNSYQYS
AMSVLLMQLW NEKGRETSID DFADACAKHP REEVRQISDQ LTPWCYLRGG QNSWMFNPNK
PPIQFEKDLV VLELDGLNGS DQLKAVCIML CIQRIQQEMF RHDQLHIVKA FILDEAWEFL
KENKGVDEQT RQVLQTLAKF LESGWRRFRK YNSLGVCISQ SMKDANESPA GIAMASNSAH
LFYLMQNGEE LARLNKEGKF IEQDYLLLRN IKTVRPFFSE VLLCSGGTKS VGRLYLPRAK
ALTYSTAPDE KKQIEIMMKD KGVDMFTACQ MIAEREGKDL VGTWRRRFDA ENES
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