| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4209 |
|---|
| Symbol | |
|---|
| ID | 4475880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | - |
|---|
| Start bp | 78004 |
|---|
| End bp | 78510 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639720567 |
|---|
| Product | Type IV secretory pathway protease TraF-like protein |
|---|
| Protein accession | YP_863725 |
|---|
| Protein GI | 117676149 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000149258 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAT TCGACAAGGC TCACTGGCGT CACACGTATT TACTTCCATT TTGCATTGCT
GCCGTCATTA CAGCTGCTAC TACGTGGTTT AGTCATAGCT ATAAACTGAT ATTGGTACTC
AACAGCGATA AATGCATTCC TGGTTCTGTA TTCGTGGTAG ACACACGACA AAAAACCGTT
AATAGCGGCG AGCTGGTGAT GTTCATGTCT CCTCAAACCG ACATTCTTCC GTCAGGGATC
AACATCATAA AGTTAGTGGC AGGTGTCGAA GGAGACCTCG TAGAAATAGG GAGGTTTAGT
GTGACCAACA AAAAACACAG GTTCCCAGCA CCTATCGACA ATGCTGCGAA TGCGCTGAAT
ATCGATGTGC AAAAGCTCAT TGGTACTAGG ACTGTAGAGA ATGGCGGGAT CTTTGTGTTA
GGCACAGAAC CTGGCAGTTA TGACAGTCGT TTCTTTGGTT CAATCAAAAC TCAGCAGGTG
ATTGGTCGTG CTTACCTCAT TATCTAA
|
|---|
| Protein sequence | MIKFDKAHWR HTYLLPFCIA AVITAATTWF SHSYKLILVL NSDKCIPGSV FVVDTRQKTV
NSGELVMFMS PQTDILPSGI NIIKLVAGVE GDLVEIGRFS VTNKKHRFPA PIDNAANALN
IDVQKLIGTR TVENGGIFVL GTEPGSYDSR FFGSIKTQQV IGRAYLII
|
|---|
| |