| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4172 |
|---|
| Symbol | |
|---|
| ID | 4475913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | - |
|---|
| Start bp | 38365 |
|---|
| End bp | 39615 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639720530 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_863688 |
|---|
| Protein GI | 117676112 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.06239 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA TAATAGCGTT ATGCGATGGG AATAAGTTTT ACAGCTCATG CGAACAGATT
TTTAACCCGC AGTATCGTGG TAAGCCTCTA ATTGTGGTCT CGAACAATGA CGGCATGACA
GTGACGTTAA GCCCTGAAGC GGCTGCGTTG GGGCTTAAAA AATTCACGCC TTACTTTCAA
GTTGCTGAGT TCTGTAGGGC GAATGGCGTG GTTGTTTGCT CGAGCAATTA CGCCTTGTAT
TCAGAAATCA GCTCTCAGTT TATGAAAGTC GCATCGAGAG AGTGTTTTTC GTATTTTCCC
TATTCGATAG ACGAGATTTT TGCTGAATTT GGGAATGATG ACACACCACA GAACCTCTCA
ATATTAGGCC GCAAGCTCAG GCACGATGTC TGGCGCGAGG TCCGATTGCC TATTGGTGTC
GGGCTAGGGG ATACCTTAAC GCTGGCGAAA GCCGCAAATC ATGCAGCGAA GCGCTTAGGC
TATCGCGGTG TTTGCGTGAT TAAAGCGCAC AATCGCGAAG CCATCTTAGG GGCGATGTTG
ACTACCGATG TGTGGGGAGT GGGTAAACGA ATTGGTCAGC GGCTAAGTTC GATGGGGATT
CATACTGCGC TGCAGTTGGC CCAAATGAAG ACTAAGACCG CGAGGAAAAT GTTTGGCGTT
AACATCGAAA GAACAATTTT CAAATTGAAT GGGACAAAGG CGTTTAACTG GGACGATATG
CCCGTTAATA AGCGACAGAT ATTCTCCACA CGCTCAGTTG GCCAGCGAAT AACGACGATA
GAGGGGTTAA AAGAGGCGTT GTCATTCCAT GCGTGTGAAG CGGCTCGAAA GCTAAGGGGT
CAAAAATCGG TAGCACGTTG CTTGGTATTT TTTGCTCAAA CATCCGCGTA TGACAAGCAT
GGTGTTAGTG GTTTCAGTCG GACAATTCAT TTACCAGCCC CCACCAGTGA CAGCATGATT
ATCAGTCAGC AAATTACCTC TGCGGTTGAG TCATTTTATG CCGCAGTGCC GTACTATCGC
GTTGGGGTAG GGCTATTAGA TATAGAACCA GGCTTGCAGC TCGATATGTT CAACGACAAC
CTGGGAAAAC CAGCGTTGAT GTCAGTCATG GACAGATTAA ACGAGCAAAT GGGCAAAGGT
GCCGTGTTCG TCGCTGCCAA TGGCATTGAG AAAAAATGGC AGATGCGGCG AGCGTTCTTG
AGTCCATCTT ATCTAACAAA TTGGAATGAA ATTCCAACCA TTCACTGTTA G
|
|---|
| Protein sequence | MSSIIALCDG NKFYSSCEQI FNPQYRGKPL IVVSNNDGMT VTLSPEAAAL GLKKFTPYFQ
VAEFCRANGV VVCSSNYALY SEISSQFMKV ASRECFSYFP YSIDEIFAEF GNDDTPQNLS
ILGRKLRHDV WREVRLPIGV GLGDTLTLAK AANHAAKRLG YRGVCVIKAH NREAILGAML
TTDVWGVGKR IGQRLSSMGI HTALQLAQMK TKTARKMFGV NIERTIFKLN GTKAFNWDDM
PVNKRQIFST RSVGQRITTI EGLKEALSFH ACEAARKLRG QKSVARCLVF FAQTSAYDKH
GVSGFSRTIH LPAPTSDSMI ISQQITSAVE SFYAAVPYYR VGVGLLDIEP GLQLDMFNDN
LGKPALMSVM DRLNEQMGKG AVFVAANGIE KKWQMRRAFL SPSYLTNWNE IPTIHC
|
|---|
| |