Gene Sfum_4069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_4069 
Symbol 
ID4457593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4949265 
End bp4950446 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content60% 
IMG OID639704839 
Productextracellular ligand-binding receptor 
Protein accessionYP_848169 
Protein GI116751482 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.236469 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAC GGAGAAACTG GCTTGCAGCG GCGCTCACCA TCTGCACATT CCTGGGTGCG 
CTCTTTGCTC CGATCATCGG TCCGAATGTC CTGGCCGCTC CGGAGCCCTA CAAGATCGGC
GCGGTTTTTT CCATCACGGG GGTCGGTTCG TTCCTGGGCG AGCCGGAGAA GAAAACGGCG
GAAATGATTC GCGACGAGAT CAACAAGCAG GGGGGAATCA ACGGGCATCC GGTCGAGCTG
ATCATCTACG ATGACGAGAG CGACACCACG AAGTGCACGC TCGCGGTGAA AAAGCTGATC
AAGAAGGACG AAGTCCCGGT GATCATCGGT CCCACGCGCA GCGGGGAGAG CATCGCCGTG
GCCACCGTCG CCGAAGAGTC CAAGGTGCCT CTCATCTCGT GCGCGACCAG CTACAAGATC
GTGACCCCCA TCGAGAGCCG CAAATGGGTG TACAAGGTTG CGGGCTCCGA CGCCCACGTG
GTCGGCAAGA TGTACGACTA CATGAAGGGC AAGGGGGTGA AGAAGGTCGC CATCATGACC
GACTCCAGCG GATATGGAGC GAGCGGGCGG GAGGAGCTGC TCCGGCTGGC GCCCGAATAC
GGGTTTACCA TCGTGGCGGA TGAACGGTTC GATCCCAAGG ACACGGACCT CACGGCCCAA
ATGACCAAAA TCCGCGGCAC CCAGCCGCAG GCCGTCGTGA ACTGGTCCAT CGGCCCCACC
CAGATCCTGG CGATCAAGAC GTGGAGAGAC CTCGGGATGG ATGCCATCCC GCTCTTCCAG
AGCCACGGTT TCGGGAGCCT GAAAAATTTG GAACTGGCGG GAAAAGCGGC CGAGGGCGTG
CTGCTGCCCC TGGCTCGTGT GAATGTCGGC TCCCTGCTCC CCGACAGCCA GCCCCAGAAG
AAAATCATCC TTGAATACAC CAGGGCATAC GAGACGCTCT ACAAGGAACC CATCTCATCT
TTCGGCGGTC ACGCCTGGGA TTCGATGCAC CTCGCCATGG CCGCGCTCAA AGCGGTTGGG
CCCGATCCGG CCAAAATCCG CGACCATATC GAACAGACCA AGGGTTTCGT CGGCATGCAC
GGTATTTTCA ATTTCTCCCC GCAGGACCAC TGCGGGTTGA GCAAGGACGA CCTGGAAATG
ATCGTGGTCA AGGATGGGAA GTGGGCGCTG GCCACGCCTT GA
 
Protein sequence
MKKRRNWLAA ALTICTFLGA LFAPIIGPNV LAAPEPYKIG AVFSITGVGS FLGEPEKKTA 
EMIRDEINKQ GGINGHPVEL IIYDDESDTT KCTLAVKKLI KKDEVPVIIG PTRSGESIAV
ATVAEESKVP LISCATSYKI VTPIESRKWV YKVAGSDAHV VGKMYDYMKG KGVKKVAIMT
DSSGYGASGR EELLRLAPEY GFTIVADERF DPKDTDLTAQ MTKIRGTQPQ AVVNWSIGPT
QILAIKTWRD LGMDAIPLFQ SHGFGSLKNL ELAGKAAEGV LLPLARVNVG SLLPDSQPQK
KIILEYTRAY ETLYKEPISS FGGHAWDSMH LAMAALKAVG PDPAKIRDHI EQTKGFVGMH
GIFNFSPQDH CGLSKDDLEM IVVKDGKWAL ATP