| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_4063 |
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| Symbol | |
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| ID | 4457587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 4935736 |
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| End bp | 4941027 |
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| Gene Length | 5292 bp |
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| Protein Length | 1763 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639704834 |
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| Product | NHL repeat-containing protein |
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| Protein accession | YP_848164 |
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| Protein GI | 116751477 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.512891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.666526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCCG AGGATCCCGC AGCGACCGCC CTGACCTTCG ACGGCAACCC GGACACGGTG
CTCACGCACC GCTCCAGCGT GGTGAGCGAC GTTTCCGGCA GCCGCTCCTG CACCATGGTG
TTCACCGGGG ACAACCGGGC GTATTCCGTC GATGCGGGCG GCAATACCAT CGCCGAGCTC
ACCACCGTCA CGGTCCGGGC GACGGAGTAC GCCACCGAGG ACTCCATGCC CGCGAAACTC
CCGCCCACTT CCGCCTACAC CTACTGCGCG GAGCTGCAGG TGGACGGAGC CGAACGGGTG
CGGTTCGAGA AACCCGTCGC GCTGTGGGTG GAGAATTTCC TGGGATTCGA CGTCGGGATT
ATCGTTCCGG TGGGCTATTA CGACCGCGAC CGCGGCGTGT GGGTGCCGCA GCCGAACGGG
CGCGTGGTGA GGCTCCTGGA CACCGACGGC GACAGCGTGG CGGACGCGCT CGATGCCGAC
GGCGACGGGC AGGCCGACGA TCTCAACGGG AACGGGTCCT TCGCCGACGA GGTCGCGGGC
CTGGACAATC CGCAGAAGTA CCCGGCGGGG GCGTCGTTTT GGCGCGTGGA GGTGAAGCAT
TTCAGTCCGT TCGATTTCAA CTGGGCGCCT TCGGTGGTTG ATCAATACCT GGGTACTTTC
ATAGACCCCA ACCCCTTGGG CGATCCGGAG GTTGACGACG AAAGAAAAGA GGAGGATGAC
TGCTCCAATC AGACGAACTC GTATGCCACT CACAGGGCCC GGACTTACCA TGAAGACATT
CCCGTCCCCG GGACTGAACT GACTTTGCAT TATGCGAGCA GCCGCGTTCA AGGCACGCAA
CACATCATCG CGGTTCCGGC AAGCGGCAAT GACGTGCTGC CGGATAGTCT CAGGGGAATT
GTCGTGAAGC TGGAAGTTGC CGGCCGTGTT TTCAAGAAGA TGCTCCCTCC CTTGCCCAAC
CAGGGCACCG AATTCGTATG GGACGGTCTG GATTGCCTCG GAAGACGGAC TGCCTCGGCA
ATCGCCAATA CCAGCATAGG GTTTATATAC GAAACACGCT ACGCGGTGCC TGAGGAAATC
AAGGAAGCGT TTGCATCGCT GGGGCTGATC GTTACCCCCG TCGGGCCCCG GGAGGAAGCG
AGGGAGGCCA TCGCGTGGAA GCACCATCAG ATGGTGATCC GGTCTTTTCA GGTCGGAGAA
GCCACATCCA TGGGGGAAGG CTGGAGCCTC TCGAACCACC ACCAGGCGGA TTGGGTCCTG
CCCGTGCTGC ACAAAGGCGA TGGGACTATC CTGGAGGAGA AGAATTCGAG CCACAAGTCC
AGGTCGTTCT TCTATTCATC CATCATCGAC ACGGTTGCGG GCAACGGGAC CGCAGGTTAC
GGCGGGGACG GGGGCGCTGC AAATCATACG GAGGTGAATT GGCCGACAGG TGTTGCCGTT
GATGCGAAAG GCGACCTGTA CATTGCCGAC TCCGGCAACT GCCGTGTGCG CAAGGTGGAC
TCCTACGGTA TCATCACGAC GGTTGCCGGC AACGGCAGTT GCGGCTACTC CGGCGACGGG
GGAGCGGCCG TCGAGGCGCA GCTCGGGTAT CCGGCATTCG TGGCGGTGGA TTCGCGGGAA
AACCTCTATA TCTCCGATAC CGAGAGCCAC CGCATCCGCA AGGTCGGACC GGATGGCGTC
ATCACGACCG TGGCCGGGTC CGGATTGTGC CATTTGAAGG TGGAAGACGG TTATGGCGGC
TACCAGGAAT ACGACGCGCC CTGCTTCGAC GGAGACCAGG GGCCCGCCGA CCAGGCCAAG
CTCAACAATC CGTCGGGTGT GGCCACGGAT GCATCGGGCA ACCTTTACAT CGCGGACACG
GGCAACCGGC GCCTTCGCAA GGTGGCCCCG AGCGGCACGA TCTCCACGGT GGCCGGCGAT
GGAGAGCTTG GTTCGGGTGC CGACGGATGG CCGTCGACCC AGCTTCATTT GAGCCCCGTT
GGGGTGGTCG CCGATTCAAG AGGCAACCTC TTTGTTTCCG ATCTTTCCCA TGGCGAGGGC
AACGGCCGCA TACGCAAGAT AGACCCTACC GGTTTCGTCA CAACCGTGGC TGGTCATGAT
TGGGAAGGAA CCCTGGGTGA TGGAGGCCCG GCAACTCAGG CGTACATAGG GTCTCCTCGA
GGTCTGGCAG TCGATCGAGG GGGCAACCTG TATTTCGCGG ACCCTTGGAT AAACCGTGTT
CGGGCCGTGA ACACCATGGG AATCATCACC ACCGTGGCGG GCTCCGATGA CGGAACGTTC
GGCGAGGACG GAGGGTTGGC GCTCAGGGCG AGGCTTGCTT TTCCGATGGA TGTGGCGGTC
GATCCCCGGG GGGACTTGTA CGCCACGGAG CAGTGGAACC AGCGGGTTCG CAAAGTCCGC
GGCCGTTCTC CTTTTGTCGA GGTGAAAAGT GCGGGAGGGA CGGTCGTTGC CGATGACAAT
GGCTTGGGGT ATGCACTCGC GGGGGGACGT CATCGAGAAA CGGTGGATCT CGATACCGGG
GCGCTGGTCT ATAAATTCGA CTATGATGAG GGCAAACGGT TGAGCTCCAT TACCGACCGG
TTCGGCAACC GGACCACCCT CGCCAGAAAT GCCGACGGGG TGCCCACTGC GATCGTCTCT
CCCGACGGTC ACACCACCGG CCTGGTCGTT GACGACGCCA ACCGCCTCCG AGAAATCATC
TACCCGGACG GCGGTTCATA TCGATTTGAA TATAACGCGG GAGGTTTGAT GACGGTCCAG
GTCCAGCAGG GGGGAAACCG GTTCGAACAT GGCTTTGACG CCGCGGGGAA GCTGACCGAC
ATCATCGATG AGGAGGGCGG GCACTGGCGG TATTCCCAGA AAGTGACCTC AACCGGGGAA
ATCCGGGCGG AGATGCTCAC CGGGGAAGGC AACCTCACGT CCTACGTGGA CAAAAACGAC
GGAAGCGGGA TCTTCACCTC CACGATTACC GACCCCAACG GGGCTGCGAC GTTCTATAGG
TCGTTTCCGG CCGCCTTCCA GGATTTGAAG TGGTCCGCCT GTGGATTGCT TCTGGAGTTC
CGCTACGACT ATGACCCCCA GTACGGTTTC CGGTTCACCA GGCAGCTCAG GGAGCATACC
ACGACCGGCT TTCTGGACAG GATCACCGAG CGGTACAGAA CTTATGAAGA CACGGATTCC
AACGGGGTTC CCGACCGGAT CACGGAAACC GTCGCCGTCA ACGGGAAGGC CACGACTCTC
GTTCATGACA CGGTCCAGCA CCGAAAAACG TTGACGTCCC CCCAGGGCAG AACGGTCACC
TCCTTCTACG ATCCCCATAC GCTGCTCACG ACGGATCTCA GGGTGCCGGG CTATCTTGAC
AAGAGCTTCG GGTACGACAC CCGGGGGCGC CCGACTTCGA TAGTAATCGG CGAACGTGAG
ACGAAGCTGG CCTACGACGA TCAAGGCCGT CTCGGTTCCG TGACCGACCC CGGGAACCGG
ACCACGTCAT ACGCGTACGA CGCTGTCGGC CGAACGACGG GAGTGTCGCG CCCGGACGGA
AGCACCATAG GTTTCAGCTA TGATCTGAAC GGCAATATAA CGGTCCTGGC CAATCCGGCG
GGCACGCCCC ATGCTTTCGG CTACAACCGG GTGAATCTGA ACGGGTCGTA TCAGACCCCG
CTCAGCGGGA GCTACCTGTA TTCCTACGAC CGGGACCGCC GTTTGACCCG GGTGCTCTTC
CCTTCGGGAA AGGAAATCCG CAATGTGTAC GAGAAGGCGA ACCTGGCTCG CGTCGAGACT
CCCGAAGGCA ACATCGAATA CGGGTACCTG TGCTCCGGCA GGTTTCCGGA ATCGATCAAC
AGGGGCGGGG AAGGAATCGC TTACGGTTAC GACGGGCCGC TCGTGACGTC CGAGACCTTC
TCGGGGACGC TGGGCGGGAC ACTGAAGTAT TCCTATGACG AGTACTACAG GGTGACCTTG
CTGAGTTACG CCGGGGCAAC GGAATCCCAT ACCTACGACA ACGACGGCCT CTTGACCGGA
ACCACCGATT TCACCATTCG CCGGGATGCG ACAAGCGGTT TTGCGGAGGC GGTTCTGGGG
GCGACCACTG CCCAAAACCG GGCGTTCAAC GGCTACGGGG AACTGGACGG GGTGGAGTAC
CGGTCGATGG ACAATCCCGT TCATTCCTGG TCGGTTTCCC GGAGCGCGGC GGGAAGGATC
GCGACCAAAA CGGAAACCGT GAACGGTTCA ACCGTTGAGT ACGCCTACGA ATATGATTCC
CTTGGGAGGC TTCTGGCGGT CCGGCGGGAC GGGGTGCCGG CGGAGGAGTA CCGCTACGAC
GCCAACGGCA ACCGCACGCA GGAGACCAAC ACTCTGCTGG GCATCATCGG AAGGACTTCG
ACCTACTCCG AGGAGGACCA CCTGCTGACT TCGGGCGGAA CCGTCTACCG CTACGACGCC
GACGGGTTTC TCACCACCCG GACGGAAGGC TCGGCGGTGA CCCGCTACGT GTATTCTTCA
CGTGGAGAGC TATTATCCGT GACCCTGCCC GACGGGAAAC GGATCGAGTA CGTCAACGAT
CCCCTGGGGA GGCGGATCGC CAAGAAAGTG AACGGGACGA TCACGCAAAA ATACCTCTGG
CAGGGGCGTA CCCGGTTGCT TGCGGTTTTT GGCGGAAACG ACGATCTGAT CCTGCGCTTC
CGGTATGCCG ACGGCAGGAT GCCTTTGTCT TTCACGAAGG GGGGCACGGA ATATTCCCTT
TCCTACGACC AGGTGGGGAC GCTCAGGACG GTGACCGACG CATCGGGCGC CGTCGTGAAG
GAGCTCGTCT ACGATTCTTT CGGCAATCTC ATCGGCGACA CCAACCCGGG GTTCTATGTT
CCGTTCGGCT TTGCGGGCGG CCTCCACGAC CCGGACACCG GCCTTGTGCG CTTCGGCTTC
CGGGACTATG ATCCGGAAGT GGGACGCTGG ACGGCAAAGG ATCCGATCGG CTTTGGGGGT
GGGGATACGA ACCTGTATGG GTACTGCTTA AGTGATCCGA TCAATTGGGT AGACTCGCAC
GGTCTTAAGG AACACTATAT TTTTGAGTTT GAACTGTTAA GTACATTATT TGAAATATTA
AATTATAAAA ATGAAATTTT GGAGAAGGCA AAGGAGCAGG CAATACATGA TCAATGTTAT
AAACAAGAGT GGGAGAGTTT ACATAATAAA TATTCGATAT TGGATGCAGG ATTTGACTGG
ATATGGTATG ATGTAGATGA GGCAGTAAAA CACTATAGAA AAGAATTTCA AAAGACAAGG
CCATGTATGT AA
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| Protein sequence | MIPEDPAATA LTFDGNPDTV LTHRSSVVSD VSGSRSCTMV FTGDNRAYSV DAGGNTIAEL
TTVTVRATEY ATEDSMPAKL PPTSAYTYCA ELQVDGAERV RFEKPVALWV ENFLGFDVGI
IVPVGYYDRD RGVWVPQPNG RVVRLLDTDG DSVADALDAD GDGQADDLNG NGSFADEVAG
LDNPQKYPAG ASFWRVEVKH FSPFDFNWAP SVVDQYLGTF IDPNPLGDPE VDDERKEEDD
CSNQTNSYAT HRARTYHEDI PVPGTELTLH YASSRVQGTQ HIIAVPASGN DVLPDSLRGI
VVKLEVAGRV FKKMLPPLPN QGTEFVWDGL DCLGRRTASA IANTSIGFIY ETRYAVPEEI
KEAFASLGLI VTPVGPREEA REAIAWKHHQ MVIRSFQVGE ATSMGEGWSL SNHHQADWVL
PVLHKGDGTI LEEKNSSHKS RSFFYSSIID TVAGNGTAGY GGDGGAANHT EVNWPTGVAV
DAKGDLYIAD SGNCRVRKVD SYGIITTVAG NGSCGYSGDG GAAVEAQLGY PAFVAVDSRE
NLYISDTESH RIRKVGPDGV ITTVAGSGLC HLKVEDGYGG YQEYDAPCFD GDQGPADQAK
LNNPSGVATD ASGNLYIADT GNRRLRKVAP SGTISTVAGD GELGSGADGW PSTQLHLSPV
GVVADSRGNL FVSDLSHGEG NGRIRKIDPT GFVTTVAGHD WEGTLGDGGP ATQAYIGSPR
GLAVDRGGNL YFADPWINRV RAVNTMGIIT TVAGSDDGTF GEDGGLALRA RLAFPMDVAV
DPRGDLYATE QWNQRVRKVR GRSPFVEVKS AGGTVVADDN GLGYALAGGR HRETVDLDTG
ALVYKFDYDE GKRLSSITDR FGNRTTLARN ADGVPTAIVS PDGHTTGLVV DDANRLREII
YPDGGSYRFE YNAGGLMTVQ VQQGGNRFEH GFDAAGKLTD IIDEEGGHWR YSQKVTSTGE
IRAEMLTGEG NLTSYVDKND GSGIFTSTIT DPNGAATFYR SFPAAFQDLK WSACGLLLEF
RYDYDPQYGF RFTRQLREHT TTGFLDRITE RYRTYEDTDS NGVPDRITET VAVNGKATTL
VHDTVQHRKT LTSPQGRTVT SFYDPHTLLT TDLRVPGYLD KSFGYDTRGR PTSIVIGERE
TKLAYDDQGR LGSVTDPGNR TTSYAYDAVG RTTGVSRPDG STIGFSYDLN GNITVLANPA
GTPHAFGYNR VNLNGSYQTP LSGSYLYSYD RDRRLTRVLF PSGKEIRNVY EKANLARVET
PEGNIEYGYL CSGRFPESIN RGGEGIAYGY DGPLVTSETF SGTLGGTLKY SYDEYYRVTL
LSYAGATESH TYDNDGLLTG TTDFTIRRDA TSGFAEAVLG ATTAQNRAFN GYGELDGVEY
RSMDNPVHSW SVSRSAAGRI ATKTETVNGS TVEYAYEYDS LGRLLAVRRD GVPAEEYRYD
ANGNRTQETN TLLGIIGRTS TYSEEDHLLT SGGTVYRYDA DGFLTTRTEG SAVTRYVYSS
RGELLSVTLP DGKRIEYVND PLGRRIAKKV NGTITQKYLW QGRTRLLAVF GGNDDLILRF
RYADGRMPLS FTKGGTEYSL SYDQVGTLRT VTDASGAVVK ELVYDSFGNL IGDTNPGFYV
PFGFAGGLHD PDTGLVRFGF RDYDPEVGRW TAKDPIGFGG GDTNLYGYCL SDPINWVDSH
GLKEHYIFEF ELLSTLFEIL NYKNEILEKA KEQAIHDQCY KQEWESLHNK YSILDAGFDW
IWYDVDEAVK HYRKEFQKTR PCM
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