Gene Sfum_3994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3994 
Symbol 
ID4457673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp4848442 
End bp4849461 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content51% 
IMG OID639704765 
Productextracellular ligand-binding receptor 
Protein accessionYP_848096 
Protein GI116751409 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000070067 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TCACAATAAT CATCAGTCTG ATAGTAGCTG TGGCCCTTGT AGCCTGGGTA 
GAAGCCACGA TGGCAGGACC TCAAGAATCT CCCATCAGGG TAGGAGTGGT ACTTCCGCTG
ACGGGAAATC TATCGAAATT CGGAAATATT GAAAAGAACT CTTTTAATAT GGGGCTGGAG
GAGATCAATG CTGCTGGCGG AGTAAACGGC AGGCCGATTG AGCTCGTGTT CGCAGATGAT
GCGTCTAGGA TCGAAACAGG TCGATCAGCG GTTGAAAAAC TGGTCGTGCA AGATAAAGTG
GTCGCTCTGA CCGGCGGATA CTCTTCTGAT GTTACACTTG CCGTGGCATT TTTGGCAAAT
CGCCTGCGCA TACCTTTCCT GGTCACGACC GGGGCGGCGG ACATGATCAC CGAGAGGGAT
TGGGACTATG TGTTCCGTAT CAACCAGCCC ATCAGCGAAT ACTCCAAAAC CCTCATTGAG
TTTCTCCATG GAGAGCTGAA GTACAAAAGC GTTGCCATAC TGCATGACAG TGGCCTGTTT
GGTCGCGCGG GCGCCATTGA GTTTTCCGAG CACGCTACTG AGTTGGGGTG GAAGATAGTC
TTGCAGGAAG GCTATGAGCC GGGCACCGTG GATTTCAAGC CATTGCTCGG TAAGGCCAAG
GCAGCCAAGC CTGATGTGGT CTATATGATC TCTTATGTTC ATGAAGCAGC CCTGCTTATG
AAACAATCCA AAGAGCTGAA TTTTGCTCCC AAAGTATTTG CTGGTGCTGG TGCCGGTTTC
ACTTTGCCGG AGTTCTACGA GCTTGCCGGC AGTGCTGCGG AAAATGTCTT TCGGCGACTC
TGTGGACACC GCAAGTCCCA TATCCAGGAG CGAGGGAATA CTCCATCAAT TACCGGAAAA
AATACGGAAC CGAAACAGAC TACCATGGTG CTGAGGCATA CGCTTCCATC TACGTTCTTG
CAGACGCGCT CAAAAGGTCG AAGGAACTTA CGCCGCGAGG CATTCGTGAA GCCCTTGTGA
 
Protein sequence
MKKLTIIISL IVAVALVAWV EATMAGPQES PIRVGVVLPL TGNLSKFGNI EKNSFNMGLE 
EINAAGGVNG RPIELVFADD ASRIETGRSA VEKLVVQDKV VALTGGYSSD VTLAVAFLAN
RLRIPFLVTT GAADMITERD WDYVFRINQP ISEYSKTLIE FLHGELKYKS VAILHDSGLF
GRAGAIEFSE HATELGWKIV LQEGYEPGTV DFKPLLGKAK AAKPDVVYMI SYVHEAALLM
KQSKELNFAP KVFAGAGAGF TLPEFYELAG SAAENVFRRL CGHRKSHIQE RGNTPSITGK
NTEPKQTTMV LRHTLPSTFL QTRSKGRRNL RREAFVKPL