| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3983 |
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| Symbol | |
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| ID | 4457697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4834596 |
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| End bp | 4837445 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639704754 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_848085 |
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| Protein GI | 116751398 |
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| COG category | [N] Cell motility
[S] Function unknown
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.808044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.937608 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGAC GGGTTCCCGA CGAAGTGAAG CCCGGCATTA TAGGAAGGTT CTTCCGGGCT
GTTTGCTTAT TGATCGTGTT CCTGCACGCA TTGCACGGAA CGGCCCTTGG TGATTGCGGC
CCTCTGACGA AAGCCGCGGA CGACCGGTTT GCCGGGGCTG AAGATTCCTA TGCGGCGGGC
AGGTATCGCG AAGCTTTGGA ATTGCTTGAC CAGGCGCTCT CAACGGACAT TTACTGCCGC
CCCGAGAAGG CGCACTTGGA ACTGATCGGG CTGGCCGCCA CCTACGAGGC TCTTGGGGAC
TACGCCATGG CCCTGGAAAC CCACCGCCGG GATCTCGAGC TTGCCATCCG GATCTTCGGG
GCCGACAACC CCGATACGGC GGTGTCACAC AACAACCTGG GGAGAATGCA CCGCTACATG
GGACAGTACC CCGAAGCACT CGCGCATCTC GAGAAGGCTT TGGTCATACT CATCCGCAGC
AGTGGACCGG ACCAGCCCGA CACCGCCGTA TCTTACAATA ACGCGGCTTC GGTCTACGAA
GAGGCGGGCA ATTACAAAAA GGCGCTCGAA TACTACGAGA AATCGCTGAG CATCAGGCTG
AAGGTCTTCG GACCGGAACA CCCGGCCACG GCAACCGCCT TCAACAACCT GGGCGGGATC
TACAAAGCCA TGGGCCAGTA CGAAAAAGCC CTCGAAAACC TCAACAAAGC CTTGCCCGTC
TATATAAAAA CCTACGGTCC CGAACACTCC GGCACAGCCA TCACGTATAA CAACATAGCA
TCGGTTCACA AGGCCCTGGG CCAATACCCC GAAGCTCTCG AACACTACCG AAAGGCGCTC
GAAATCGATC TCAAGACCAG CGGTCCGGAT CACCCGGCCA CCGCGGTGAC TTACAACAAC
ATTGCCTCCA CCCACGAGAG CATGGGGGAG TTCGAAAAGG CACTGCCGTA TTTCGACAAG
GCACTGTCGA TCCAGTTGAG CAGGCTTGGC TCCGATCATC CCGCCACGGC GAGGACCTAC
AACAATCTGG GGTCGGTTTA CCAGTCCACC GGCGAATGCT CCAGGGCGAT CGAATACTAC
CGAAAGGCGC TGCCGGCCGC GCTGCGCTCC GGCGACGCCC AGCTTCAATG GAATGTGCTC
GCCGGAATGA GCTCGACCTT TTCAAAGCTC GGCAATCCGA ACGTCGCCAT CCTCTTCGGA
AAACAGGCGA TCAATGCAAT TCAGGCCATG CGGTCCTCCA TGGCGAGCAT GGACATGTCT
CTCCGGACAA GCTTCATCCG CGACAAGGAA AACGTTTACA AGCGCCTTGC GACACTGTTG
ACGAACATGG GCAGAATTCC TGAAGCGCAG CAGGTGATGG ACCTTCTGAA GGAAGAGGAG
TTTTTCGAGT TTGTGCGAGG AATGGAGGTC CCGAAGGCCG GCGAAGGGAT CGGCTACAGC
GAGGCCGAAA AACCCTGGGT TGAAAAATTC GCCATGATCA GCGATCAAAT TGCGCAGAGA
GGCGCGGAGT ATGCGGAAAT CAGGAGAAAA GCCAAGAGCA GCGAGCTCAC CGAGGAGGAC
AGGAAGAAGC AGAAGGAAAT CCTGTCCGAC CTGGAGACAG CGAGCCGCAC CTTCGAGGCT
TTCATCGACA GGATCTCCGC GGAATTTGAG AAAACCGCCG GGGAAAAAGC CGCGGAGCTG
ACGGAAAAAA GCCTGCGCGA CCTGAAGTCC TTCCAGTCCC TCCTGAGGTA CCTGGGAAAC
GGGACGGTCG TCGTCCACTA TCTCGTGACC GAAAAGAAAC TGATCGTCAT ACTGACGACT
TCGGAAACAC AACTGGCAAG AGAGACAAAC GTCAGCGCCA TCGAGCTCAA TCACATGATC
TCGGATCTCA GAAAGGATCT CCTGTGCCCG TCGAAAGACC CCCGGCCCGC TTCCAGGAAG
TTGTTCACGG CTGTCCTGGG CCCGATTTCC CGCGACCTGG AGCAGGCGGG CGCCACGACA
CTTCTGCTTT CGCTTGATGG AGCACTCAGA TACATTCCTT TCTCCTGTCT TTACGACGGC
CGGAAGTACC TGATCGAGCG CTATACGCCC GTGGTTTTTA CGCCCGCCAG CCGTGACAGG
CTGAGGGATT CCCCTTCCCT ATCCTGGCAA GTTGCCGGGT TCGGGGTCGC GGACAAGGTG
AGCGACCATT TCAGGGCCCT GCCTTCGGTT CGATATGAAT TGCACAGTAT TGTCGGGCAG
GAAGGCAAAG GCGGCGTTCT CCCGGGTATC GTGAAACTCG ACGGCGAGTT CACGGTTGAC
GCCATGCGCG AGGCGCTCCT TCGCGACTAC CCCGTGGTGC ACATTGCCAG CCATTTCGTC
TTCCAACCGA CAGCCGAGGA ATCCTTTCTG TTGATGGGCG ACGGGTCTCA GCTGACTTTG
GACAAAATCA AGCACCAGGG CTTCCGGTTT GACGAGGTGG ACCTGCTGAC CCTTTCGGCA
TGTGAAACCG GACTGGGCGC ACGGGATGCC GACGGGCGGG AAGTCGAGGG TTTCGGAGTG
CTTGCACAGC GCAGCGGGGC AAAAGGGGTT ATCGCGTCCC TATGGTCCGT TGCCGACAGG
AGTACAGGAC TGCTCATGAA GAAAATGTAC GAAGCGCGCG CGGGAAACCC CTCCACAAAC
AAGGCCGAGT GCCTGCGCCG GGCTCAGCTG GAATTGCTCC GGGGAGAAGA GGAGAAAGAG
CCATCCAGCG AGCCGCCATC CCAGCAAGAG GCCGGGCAGT CGCGCGATTG CGGCGGGAGG
AACAGCCCGT CCTTTGAAAC ACCTCCGTCG GCACCTTACG CCCACCCTTA TTTCTGGGCG
CCCTTCGTTT TGATGGGGAA TTTCAGGTAG
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| Protein sequence | MNGRVPDEVK PGIIGRFFRA VCLLIVFLHA LHGTALGDCG PLTKAADDRF AGAEDSYAAG
RYREALELLD QALSTDIYCR PEKAHLELIG LAATYEALGD YAMALETHRR DLELAIRIFG
ADNPDTAVSH NNLGRMHRYM GQYPEALAHL EKALVILIRS SGPDQPDTAV SYNNAASVYE
EAGNYKKALE YYEKSLSIRL KVFGPEHPAT ATAFNNLGGI YKAMGQYEKA LENLNKALPV
YIKTYGPEHS GTAITYNNIA SVHKALGQYP EALEHYRKAL EIDLKTSGPD HPATAVTYNN
IASTHESMGE FEKALPYFDK ALSIQLSRLG SDHPATARTY NNLGSVYQST GECSRAIEYY
RKALPAALRS GDAQLQWNVL AGMSSTFSKL GNPNVAILFG KQAINAIQAM RSSMASMDMS
LRTSFIRDKE NVYKRLATLL TNMGRIPEAQ QVMDLLKEEE FFEFVRGMEV PKAGEGIGYS
EAEKPWVEKF AMISDQIAQR GAEYAEIRRK AKSSELTEED RKKQKEILSD LETASRTFEA
FIDRISAEFE KTAGEKAAEL TEKSLRDLKS FQSLLRYLGN GTVVVHYLVT EKKLIVILTT
SETQLARETN VSAIELNHMI SDLRKDLLCP SKDPRPASRK LFTAVLGPIS RDLEQAGATT
LLLSLDGALR YIPFSCLYDG RKYLIERYTP VVFTPASRDR LRDSPSLSWQ VAGFGVADKV
SDHFRALPSV RYELHSIVGQ EGKGGVLPGI VKLDGEFTVD AMREALLRDY PVVHIASHFV
FQPTAEESFL LMGDGSQLTL DKIKHQGFRF DEVDLLTLSA CETGLGARDA DGREVEGFGV
LAQRSGAKGV IASLWSVADR STGLLMKKMY EARAGNPSTN KAECLRRAQL ELLRGEEEKE
PSSEPPSQQE AGQSRDCGGR NSPSFETPPS APYAHPYFWA PFVLMGNFR
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